PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00066792001
Common NameGSBRNA2T00066792001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ARR-B
Protein Properties Length: 595aa    MW: 67223.6 Da    PI: 6.011
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00066792001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like70.23.3e-22230282154
              G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYR 54 
                          k +l W+  LH+ F++a++++ G +kA+Pk+ile+m+v  Lt+e+v+SHLQkYR
  GSBRNA2T00066792001 230 KSKLSWSDYLHDLFLQAIHHI-GLDKAVPKKILEFMDVSYLTRENVASHLQKYR 282
                          679******************.******************************** PP
2Response_reg68.23.8e-23181331110
                          EEEESSSHHHHHHHHHHHHHTTC....EEEE..EESSHHHHHHHH..HHHHESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTT CS
         Response_reg   1 vlivdDeplvrellrqalekegy....eeva..eaddgeealell..kekdpDlillDiempgmdGlellkeireeepklpiivvtahge 82 
                          +++vdD+p+ re++ ++le+++y    +e++  +++d++eal +l  +++++Dli++D  mpgm+Gl+l ++i+++  + p+iv+++  +
  GSBRNA2T00066792001  18 IMVVDDDPVSREIVSRMLERSKYrdpsMEITviAVRDAREALSTLkiQRNNIDLIVTDYYMPGMNGLQLKQQITRQFGNFPVIVMSSDTN 107
                          89*****************8777555533333599********99445555**********************99999********7766 PP

                          HHHHHHHHHTTESEEEESS--HHHHHHH CS
         Response_reg  83 eedalealkaGakdflsKpfdpeelvka 110
                              +e l  G   fl Kp++p +l k 
  GSBRNA2T00066792001 108 --KEQESLACGSVCFLPKPIKPTDLPKI 133
                          ..67899****************99875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23002.4E-2715143No hitNo description
SMARTSM004484.8E-2216134IPR001789Signal transduction response regulator, receiver domain
SuperFamilySSF521721.42E-2516147IPR011006CheY-like superfamily
PROSITE profilePS5011034.11117138IPR001789Signal transduction response regulator, receiver domain
PfamPF000725.0E-2018133IPR001789Signal transduction response regulator, receiver domain
CDDcd001568.91E-2519130No hitNo description
SuperFamilySSF466895.38E-16228287IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-22228287IPR009057Homeodomain-like
TIGRFAMsTIGR015571.2E-24230284IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 595 aa     Download sequence    Send to blast
MTFAQSLNNQ SSVLRINIMV VDDDPVSREI VSRMLERSKY RDPSMEITVI AVRDAREALS  60
TLKIQRNNID LIVTDYYMPG MNGLQLKQQI TRQFGNFPVI VMSSDTNKEQ ESLACGSVCF  120
LPKPIKPTDL PKIYQVAFTY KRKGKSISRT EHNHMDTNVS IPQQIQLLPE QANVSKTKKN  180
KKFSSKSDSR SVNSFNGSCD STDGSRKNRK RKSNGDFGDD DESLPQPSKK SKLSWSDYLH  240
DLFLQAIHHI GLDKAVPKKI LEFMDVSYLT RENVASHLQK YRNFLRKVAE NSGMLHGRGM  300
EPYHSNYTTS SSWYDTGLNN KSSYSKPRHG LGQSRLLSNT CEPVRFNQMP YNHMNRNLSF  360
STQPLQNEGS RSFLEATVTA NKTGQTSQVL GFGQHGMSAI NGNNFNDNTM SSYARMSSYE  420
SLTPTQPGPS NISYGLLLNN ENTAYKPQPH ASTTIQLDNL SMYDDLGNIN EIPCDLSNFD  480
FDHDKQQEEA VSANKFEIPA NLETELNQTS SLEEDGDWTF LNISQGHFNE KTSNTFAAPE  540
TNDPTFNKNP NHAQEQDVPD FDWSLLDLEN LANENDFMDS MFTNDNSMFT NDMN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A6e-17229289464ARR10-B
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Mainly expressed in siliques. Also found in germinating seedlings, stems, flowers and roots, but not in rosette leaves. {ECO:0000269|PubMed:15173562, ECO:0000269|Ref.3}.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00066792001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009125679.10.0PREDICTED: putative two-component response regulator ARR21 isoform X1
RefseqXP_009125680.10.0PREDICTED: putative two-component response regulator ARR21 isoform X2
SwissprotQ9LYP50.0ARR21_ARATH; Putative two-component response regulator ARR21
TrEMBLA0A078JJT40.0A0A078JJT4_BRANA; BnaAnng25110D protein
STRINGBra028705.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61131737
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07210.10.0response regulator 21
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]