PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00066736001
Common NameGSBRNA2T00066736001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 389aa    MW: 44735.4 Da    PI: 6.69
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00066736001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.20.00013149172123
                          EEETTTTEEESSHHHHHHHHHH.T CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                          y+C+ Cg+ ++++ +Lk+H +  H
  GSBRNA2T00066736001 149 YVCGVCGRKCRTNLDLKKHFKQlH 172
                          9******************98766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.10108.5E-569139IPR029060PIN domain-like
PROSITE profilePS5015710.741149177IPR007087Zinc finger, C2H2
PROSITE patternPS000280151172IPR007087Zinc finger, C2H2
CDDcd061671.81E-10163303No hitNo description
Gene3DG3DSA:3.40.50.10108.5E-5234288IPR029060PIN domain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
MSLFCNSIDT LYPKPYLPHK SHFFSLSGTK LRNLSFAGFP HLRIKSYLKS ASSSEIDMVR  60
NKEGVFAPKE KKVVVLWDLD NKPPRGPPFE AATELRRVAE HLGRVVEISA YANRHAFIHL  120
PHWVVEERRS RRSLDFAERK GEVVPEEPYV CGVCGRKCRT NLDLKKHFKQ LHERERQKKV  180
NRMRSLKGKK RQKFKERYVS GNEKYNEAAR RLLTPKVGYG LEAELRRAGV YVKTVEDKPQ  240
AADWAVKRQI QHSMTRGIDW LVLVSDDKDF SDMLRKAREA DLGTVVVSDR DGVLGRQADL  300
WVPWMGVENG EIGEKDLVPE KRRRFDEEGE EEEEGDGLFS LAYDEDEREE MRVESDGFGR  360
FSVSAFSEDE GDFALSDSDD DSDDELSF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1319324EKRRRF
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00066736001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2324390.0AC232439.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB003D07, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009132570.10.0PREDICTED: uncharacterized protein LOC103857156
TrEMBLA0A078HND40.0A0A078HND4_BRANA; BnaA03g12900D protein
TrEMBLA0A3P5ZSS50.0A0A3P5ZSS5_BRACM; Uncharacterized protein
STRINGBra029148.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM125842429
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52010.10.0C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]