PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00066691001
Common NameGSBRNA2T00066691001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 381aa    MW: 44115.9 Da    PI: 6.9723
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00066691001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.41.3e-05115139123
                          EEET..TTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                          y+C    C+k F ++s LkrH   H
  GSBRNA2T00066691001 115 YVCDypGCDKKFMDSSKLKRHWLIH 139
                          89*******************9988 PP
2zf-C2H220.31.5e-06145169123
                          EEET..TTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                          ++C+   Cgk Fs   nL++H++tH
  GSBRNA2T00066691001 145 FVCTyqGCGKAFSLDFNLRSHMKTH 169
                          89**********************9 PP
3zf-C2H212.20.00056175200123
                          EEET..TTTEEESSHHHHHHHHHH.T CS
              zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                          + Cp   Cgk++   + Lk+H    H
  GSBRNA2T00066691001 175 HICPysGCGKRYAYEYKLKNHVAAyH 200
                          68*******************87666 PP
4zf-C2H214.78.7e-05239264123
                          EEET..TTTEEESSHHHHHHHHHH.T CS
              zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                          y Cp   Cgk + + + Lk H+++ H
  GSBRNA2T00066691001 239 YACPyeGCGKDYIHEYKLKLHLKReH 264
                          89*********************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.3E-1381112IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.53386115IPR007087Zinc finger, C2H2
SMARTSM003550.01386110IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028088110IPR007087Zinc finger, C2H2
SuperFamilySSF576677.53E-989139No hitNo description
Gene3DG3DSA:3.30.160.601.8E-14113135IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0014115139IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.528115144IPR007087Zinc finger, C2H2
PROSITE patternPS000280117139IPR007087Zinc finger, C2H2
SuperFamilySSF576673.56E-14126180No hitNo description
Gene3DG3DSA:3.30.160.602.5E-19136170IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015712.757145174IPR007087Zinc finger, C2H2
SMARTSM003558.1E-4145169IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280147169IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.606.2E-7171197IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.012175200IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280177200IPR007087Zinc finger, C2H2
SuperFamilySSF576674.34E-5236262No hitNo description
Gene3DG3DSA:3.30.160.608.3E-9236261IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0092239264IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.055239269IPR007087Zinc finger, C2H2
PROSITE patternPS000280241264IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MEQQYQYQNN PFERRPILKS SKASPSIRWI KDWVPQDIVA TGAKCYLRKW VTEETVKRLK  60
EKEKEKEKEP TTTDHDPPEP TSEILFLCSY DGCGKIFFDV SALRKHSHIH GERQYVCDYP  120
GCDKKFMDSS KLKRHWLIHT GARDFVCTYQ GCGKAFSLDF NLRSHMKTHS QENYHICPYS  180
GCGKRYAYEY KLKNHVAAYH EKNGAGETPT YTPPAEKVSR TPKTPSATVY GSASLERPYA  240
CPYEGCGKDY IHEYKLKLHL KREHLPEENN NNTPTKHDLE EGSDQDFYRK HASNGKSQTH  300
RQQSRAKPDM RTPPAKVLKK GSTSSPAKER IAKKPWQVRE TFEGEDSEET EEDRENVDDG  360
WRFVGNNEEE DDDEETEDEN *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ubd_C2e-35881998117PROTEIN (YY1 ZINC FINGER DOMAIN)
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Rapidly induced following seed germination, especially in tender cotyledons. {ECO:0000269|PubMed:26961720}.
UniprotTISSUE SPECIFICITY: Mostly expressed in flowers, to a lower extent in seedlings, stems and leaves, and, at low levels, in roots and senescent leaves. {ECO:0000269|PubMed:26961720}.
Functional Description ? help Back to Top
Source Description
UniProtDual-function transcription factor with both repression and activation activities. Binds to 5'-CCATATT-3' motif in target gene promoters (e.g. ABR1) (PubMed:26961720). Binds also to G-rich DNA motif 5'-GGGGGCAGTGG-3' (PubMed:22508367). Regulates the expression of genes involved in diverse cellular pathways, including glucose metabolism, photosynthesis, phototropism and stress response (e.g. salt, drought and osmotic stress) (PubMed:22508367, PubMed:26961720). Regulates plant immunity, especially during necrotrophic fungal infection (e.g. B.cinerea) (PubMed:24451981). Binds to ABR1 promoter and promotes its expression, thus negatively regulating the abscisic acid (ABA) signaling pathway. Represses ABA- and salt-responsive genes expression (PubMed:26961720). {ECO:0000269|PubMed:22508367, ECO:0000269|PubMed:24451981, ECO:0000269|PubMed:26961720}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00066691001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in an ABI1- and ABI4-dependent manner. Stimulated by stress conditions including high salt, osmotic stress (e.g. mannitol) and dehydration. May be induced by ABI4 but repressed by ABR1. Repressed by darkness but induced by light. {ECO:0000269|PubMed:26961720}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2411880.0AC241188.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH120G08, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013640533.10.0zinc finger transcription factor YY1-like
SwissprotQ2V3L30.0YY1_ARATH; Zinc finger transcription factor YY1
TrEMBLA0A078HLS80.0A0A078HLS8_BRANA; BnaA03g13270D protein
STRINGBra029186.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58592846
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G06634.11e-174C2H2 family protein
Publications ? help Back to Top
  1. Kumekawa N,Hosouchi T,Tsuruoka H,Kotani H
    The size and sequence organization of the centromeric region of Arabidopsis thaliana chromosome 4.
    DNA Res., 2001. 8(6): p. 285-90
    [PMID:11853315]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  3. Li T,Wu XY,Li H,Song JH,Liu JY
    A Dual-Function Transcription Factor, AtYY1, Is a Novel Negative Regulator of the Arabidopsis ABA Response Network.
    Mol Plant, 2016. 9(5): p. 650-661
    [PMID:26961720]
  4. Wu XY,Li T
    A Casein Kinase II Phosphorylation Site in AtYY1 Affects Its Activity, Stability, and Function in the ABA Response.
    Front Plant Sci, 2017. 8: p. 323
    [PMID:28348572]