PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00066556001
Common NameGSBRNA2T00066556001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family WRKY
Protein Properties Length: 781aa    MW: 85808.8 Da    PI: 6.3553
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00066556001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY83.42.2e-26207266259
                          --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-.SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkvers.aedpkvveitYegeHnhe 59 
                          +Dg++WrKYGqK+ k ++ pr+YYrC+++ +Cpv+k+v+r+ ++d+++  +tYeg+H+h+
  GSBRNA2T00066556001 207 NDGCQWRKYGQKTAKANPLPRAYYRCSMSsNCPVRKQVQRCgEDDTSAYMTTYEGTHDHP 266
                          8***************************99**********934578899**********7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.4E-27191268IPR003657WRKY domain
PROSITE profilePS5081124.593201268IPR003657WRKY domain
SuperFamilySSF1182909.15E-24202268IPR003657WRKY domain
SMARTSM007749.6E-33206267IPR003657WRKY domain
PfamPF031069.3E-25207266IPR003657WRKY domain
SuperFamilySSF546318.72E-16397484No hitNo description
PROSITE profilePS513719.661412478IPR000644CBS domain
SMARTSM001160.09417473IPR000644CBS domain
CDDcd022050.00106417475No hitNo description
Gene3DG3DSA:3.10.580.102.0E-9417477No hitNo description
SuperFamilySSF546318.72E-16524598No hitNo description
Gene3DG3DSA:3.10.580.102.0E-9536597No hitNo description
PROSITE profilePS513716.413548608IPR000644CBS domain
SMARTSM0011623552601IPR000644CBS domain
SuperFamilySSF546315.26E-28612767No hitNo description
PfamPF005713.6E-8625677IPR000644CBS domain
PROSITE profilePS5137112.747625683IPR000644CBS domain
Gene3DG3DSA:3.10.580.103.3E-22625760No hitNo description
CDDcd046422.85E-43628757No hitNo description
SMARTSM001167.5E-8629678IPR000644CBS domain
PROSITE profilePS5137110.763707766IPR000644CBS domain
SMARTSM001161.3E-9710759IPR000644CBS domain
PfamPF005713.3E-9712756IPR000644CBS domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 781 aa     Download sequence    Send to blast
MIKEKISSCV HPSDGIVESD KEVELDATKA KLEKVREENE KLKLLLSTVL TDYKSLQMHV  60
SNVIRPQHEA SMELDTNSHD NFGVDISLRL GRSDLNVSKN VDEIDKISLD KISDEISEGS  120
DKKRSALGLG FRIQSCEDTD TDLTMKLDYL SKDVKHTKAD NKCISSRKDN KTARNEDHQE  180
AFEVHEQPGL KKTRVCVKAP CEDPSINDGC QWRKYGQKTA KANPLPRAYY RCSMSSNCPV  240
RKQVQRCGED DTSAYMTTYE GTHDHPLPME ATHMAAGTSA AASLLQSGSS SSPSLSYYFP  300
FHHVSFSTTN AHPTVTLDLT RPNYDPNQLP THSSLSFSSS SSDRPSPTNS HTLSFSDMAE  360
SEKSHVDKEI RSSVSSCEAY FEKVQSRKNL PKSLQDTLNS AFAGIPVSSF PQVPGGRVIE  420
IPAETSVSEA VRILSDSKIL SAPVINKDHE SSLDWKERYS GIIDYSSIIL WVLESAELAA  480
IALSATSRWR FRPAAAVGAA VAGGVAADRG IGKDAVTAAD SLGKDFYQVI LQEEPFKSTT  540
VGTILKSFRY APFLPVSTES SMLSVLLLLS KYRLRNVPVI KPGEPDIKNY ITQSAVVHGL  600
EGCKGRDWFD HISALPISDL GLPFMSPSEV ISIGSEELIL EAFKRMRDNN IGGLPVVEGA  660
NKKVVGNISM RDIRYLLLQP EVFSNFRQLT VKTFAAKIAT AGEKYGSASL AITCRPDSTL  720
GSVINSLASR SVHRVYVVDG DEDELYGVIT LRDVISCFVS EPPNYFENCL GFSVKEVLNR  780
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-182062681474WRKY transcription factor 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.291020.0root
Functional Description ? help Back to Top
Source Description
UniProtRegulatory subunit of the probable trimeric SNF1-related protein kinase (SnRK) complex, which may play a role in a signal transduction cascade regulating gene expression and carbohydrate metabolism in higher plants. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00066556001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9124040.0EU912404.1 Brassica napus WRKY transcription factor 36 (WRKY36.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013592829.10.0PREDICTED: SNF1-related protein kinase regulatory subunit gamma-1-like
SwissprotQ9CAR30.0KINGL_ARATH; SNF1-related protein kinase regulatory subunit gamma-1-like
TrEMBLA0A078HLK50.0A0A078HLK5_BRANA; BnaA07g28340D protein
STRINGBra016263.1-P0.0(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69810.11e-138WRKY DNA-binding protein 36
Publications ? help Back to Top
  1. Jeong BC,Yoo KS,Jung KW,Shin JS,Song HK
    Purification, crystallization and preliminary X-ray diffraction analysis of a cystathionine beta-synthase domain-containing protein, CDCP2, from Arabidopsis thaliana.
    Acta Crystallogr. Sect. F Struct. Biol. Cryst. Commun., 2008. 64(Pt 9): p. 825-7
    [PMID:18765915]
  2. Kushwaha HR,Singh AK,Sopory SK,Singla-Pareek SL,Pareek A
    Genome wide expression analysis of CBS domain containing proteins in Arabidopsis thaliana (L.) Heynh and Oryza sativa L. reveals their developmental and stress regulation.
    BMC Genomics, 2009. 10: p. 200
    [PMID:19400948]
  3. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]