PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00066423001
Common NameGSBRNA2T00066423001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family WRKY
Protein Properties Length: 259aa    MW: 29451.1 Da    PI: 5.1586
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00066423001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY67.91.6e-21100160259
                          --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                          +Dg++WrKYGqK++k s + r YYrC++a   +C+++k+v++ ++ p+v  +tY g+H +e
  GSBRNA2T00066423001 100 NDGFSWRKYGQKKIKTSSHQRCYYRCAYAkdrNCNATKRVQQIQNSPSVYRTTYVGKHICE 160
                          8***************************99999*************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081118.94694162IPR003657WRKY domain
SuperFamilySSF1182905.49E-2296161IPR003657WRKY domain
Gene3DG3DSA:2.20.25.809.4E-2397160IPR003657WRKY domain
SMARTSM007748.9E-3199161IPR003657WRKY domain
PfamPF031061.7E-22100159IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MSHGIDKAVE ALLRGQESAY RLKTVLEHAS SVPTEPLFDT VLDSFSFALS LFASSNPQPH  60
RESSQNKATP VVAQKSPKKN SHGEECLEQY IQDSPTPFCN DGFSWRKYGQ KKIKTSSHQR  120
CYYRCAYAKD RNCNATKRVQ QIQNSPSVYR TTYVGKHICE VNAFLQPNED IINGSKMIRF  180
DKIDQVMPDS VMPQLVPVEQ QEAIIIEGTD QIMNLECGSN EFLVDDEQLW EYQFPPCSPG  240
NFMFLDDLSE FDYNPFHV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A1e-14100160969OsWRKY45
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00066423001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF4300720.0KF430072.1 Brassica rapa WRKY transcription factor 66 (WRKY66) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013619271.10.0PREDICTED: probable WRKY transcription factor 64
SwissprotQ9C5578e-81WRK64_ARATH; Probable WRKY transcription factor 64
TrEMBLA0A078HMU90.0A0A078HMU9_BRANA; BnaC02g22950D protein
STRINGBo2g095820.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56091847
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66560.11e-77WRKY DNA-binding protein 64
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]