PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00066154001
Common NameGSBRNA2T00066154001, LOC106388378
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 417aa    MW: 46441.2 Da    PI: 5.1646
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00066154001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B367.51.9e-2171163699
                          ..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
                   B3   6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                          +++++l+++ l+lp +f+ ++g k  + ++++l+de+ rsW + l+++k+s+++ +t+GW++F+++ng keg  + Fkl+ r++++++++
  GSBRNA2T00066154001  71 VTASNLEEDSLCLPPDFTISNGFKR-KCRKIVLTDERERSWALDLRFNKSSDTFCITRGWRNFCEENGRKEGSLFKFKLIMRNGETPLLS 159
                          5788999999***********8775.567***************************************************999999***9 PP

                          EE-S CS
                   B3  96 vfrk 99 
                          v+ +
  GSBRNA2T00066154001 160 VCPT 163
                          9975 PP
2B354.71.9e-17192286199
                          EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                          f++ ++++d+lks+rl+lp +f++e+g++k++  ++tl  ++g ++  +l  r +sgr+ l+kG k+F++angL+ g++++++l++ +++
  GSBRNA2T00066154001 192 FVTLTLTNDSLKSSRLYLPLPFLKENGMDKPG--MVTLLGKDGTRMLANL-LRENSGRMSLGKGLKDFARANGLNMGESFTLELIW-ENA 277
                          7788899********************99766..8***************.799999*****************************.888 PP

                          ..EEEEE-S CS
                   B3  91 elvvkvfrk 99 
                          ++v++++++
  GSBRNA2T00066154001 278 TPVLSLLST 286
                          899988765 PP
3B364.71.4e-20294388199
                          EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                          f++ +++ d++k++rl lp +f++e+g+++++  t+ l  ++g +W  +l  r ++gr+ l+kGWk+F++angL+ g++++++ ++ +++
  GSBRNA2T00066154001 294 FVTLTLTQDSFKNSRLGLPLPFMRENGMNEPG--TIALLGKDGTKWMTNL-LRESQGRMSLGKGWKDFARANGLEIGESFTLESIW-EDA 379
                          7778899********************99665..8***************.6888888*************************999.888 PP

                          ..EEEEE-S CS
                   B3  91 elvvkvfrk 99 
                          ++++++ ++
  GSBRNA2T00066154001 380 TPMLSLSSR 388
                          899888765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.3E-1959162IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.75E-1862163IPR015300DNA-binding pseudobarrel domain
CDDcd100171.62E-1966154No hitNo description
PROSITE profilePS5086313.87466164IPR003340B3 DNA binding domain
SMARTSM010191.3E-2267164IPR003340B3 DNA binding domain
PfamPF023626.3E-1971162IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.108.6E-18183282IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.28E-18188284IPR015300DNA-binding pseudobarrel domain
CDDcd100179.29E-16191285No hitNo description
PfamPF023621.1E-16192285IPR003340B3 DNA binding domain
SMARTSM010192.4E-25192287IPR003340B3 DNA binding domain
PROSITE profilePS5086311.66192287IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.109.7E-21287389IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.14E-21290390IPR015300DNA-binding pseudobarrel domain
CDDcd100173.02E-18293385No hitNo description
PfamPF023623.9E-20294388IPR003340B3 DNA binding domain
SMARTSM010192.0E-29294389IPR003340B3 DNA binding domain
PROSITE profilePS5086315.34294389IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 417 aa     Download sequence    Send to blast
MLSGSGSTSC DIHTNNEDQE NMGYISRKKH PITEEVDDGQ DNTGNKKVKK NNSEAEADSS  60
SSDSSCFVAP VTASNLEEDS LCLPPDFTIS NGFKRKCRKI VLTDERERSW ALDLRFNKSS  120
DTFCITRGWR NFCEENGRKE GSLFKFKLIM RNGETPLLSV CPTESISDGT QGVDENIPQI  180
CRDSTLPNPN RFVTLTLTND SLKSSRLYLP LPFLKENGMD KPGMVTLLGK DGTRMLANLL  240
RENSGRMSLG KGLKDFARAN GLNMGESFTL ELIWENATPV LSLLSTEFRS QNRFVTLTLT  300
QDSFKNSRLG LPLPFMRENG MNEPGTIALL GKDGTKWMTN LLRESQGRMS LGKGWKDFAR  360
ANGLEIGESF TLESIWEDAT PMLSLSSRES KREKVYVSTE PSIGNETKKD ENNIED*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.134201e-169leaf| seed
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00066154001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013683882.10.0B3 domain-containing protein REM12
SwissprotP0CAP41e-120REM12_ARATH; B3 domain-containing protein REM12
TrEMBLA0A078HP160.0A0A078HP16_BRANA; BnaC03g26790D protein
STRINGBo3g041930.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM78281641
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24680.21e-115B3 family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]