PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00065352001
Common NameGSBRNA2T00065352001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HSF
Protein Properties Length: 440aa    MW: 48838.1 Da    PI: 4.4638
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00065352001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind113.81.1e-35271192103
                          HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS
         HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 
                          Fl+k+y++++d++++e++sws+ +nsfvv++  ef+k +Lpk+Fkh+nf+SFvRQLn+YgF+kv+ ++         weF+++ F +g+k
  GSBRNA2T00065352001  27 FLSKTYDMVDDPSTNEVVSWSSGNNSFVVWNVPEFSKVLLPKHFKHNNFSSFVRQLNTYGFRKVDPDQ---------WEFANEGFLRGQK 107
                          9****************************************************************999.........************* PP

                          XXXXXXXXXXXX CS
         HSF_DNA-bind  92 ellekikrkkse 103
                          +ll+ i r+k +
  GSBRNA2T00065352001 108 QLLKGIVRRKPQ 119
                          ********9976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.4E-5823116IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.63E-3423116IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.103.4E-3823116IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.5E-192750IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.7E-3027116IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.5E-196577IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406690IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.5E-197890IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 440 aa     Download sequence    Send to blast
MEPVQSVPSE NSNPPSIPPP VSSVPPFLSK TYDMVDDPST NEVVSWSSGN NSFVVWNVPE  60
FSKVLLPKHF KHNNFSSFVR QLNTYGFRKV DPDQWEFANE GFLRGQKQLL KGIVRRKPQN  120
QQQTQVKNSS AGACVEVGKF GIEEEVERLK HDKNVLMQEL VRLSQQQQAT EHQLQNVGQK  180
VQVMEQRQQQ TMSFLAKAVQ SPGFLNQLVQ QNSDCNKHIQ GSNKKRRLPG DEEESCGELN  240
RQIVKYQPSL NEAAQTMLGQ ILNRSSSTRC ESVSNNPDSF LLDDAHSTNS AHSTMNQVHE  300
AGLVDHPQAV PSPSQGVAAA ASSWSPESEL VGFETGDGVC FDPIMAALGG SLEIESDEVS  360
RVGEGEMTEL QNEVPKLPGV QDSLWEQFFA DEIGEGDDIL SGAVENGDMV MEQEPNEWKQ  420
QEMNHLSEQM ELLSSETRN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A2e-252211615120Heat shock factor protein 1
5d5u_B2e-252211624129Heat shock factor protein 1
5d5v_B2e-252211624129Heat shock factor protein 1
5d5v_D2e-252211624129Heat shock factor protein 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.100090.0seed
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00065352001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: DNA-binding capacity is reduced by HSBP in vitro. {ECO:0000269|PubMed:20388662}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013621550.10.0PREDICTED: heat stress transcription factor A-1b
SwissprotO818210.0HFA1B_ARATH; Heat stress transcription factor A-1b
TrEMBLA0A078HI230.0A0A078HI23_BRANA; BnaC02g06880D protein
STRINGBra023584.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22362371
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16820.20.0heat shock factor 3
Publications ? help Back to Top
  1. Hsu SF,Jinn TL
    AtHSBP functions in seed development and the motif is required for subcellular localization and interaction with AtHSFs.
    Plant Signal Behav, 2010. 5(8): p. 1042-4
    [PMID:20657173]
  2. Bechtold U, et al.
    Arabidopsis HEAT SHOCK TRANSCRIPTION FACTORA1b overexpression enhances water productivity, resistance to drought, and infection.
    J. Exp. Bot., 2013. 64(11): p. 3467-81
    [PMID:23828547]
  3. Guan Q,Yue X,Zeng H,Zhu J
    The protein phosphatase RCF2 and its interacting partner NAC019 are critical for heat stress-responsive gene regulation and thermotolerance in Arabidopsis.
    Plant Cell, 2014. 26(1): p. 438-53
    [PMID:24415771]
  4. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]