PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00065055001
Common NameGSBRNA2T00065055001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 186aa    MW: 20486.3 Da    PI: 5.8403
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00065055001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.22e-183787155
                  AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                         + y+GVr ++ +g+Wv+eIr+p++   + r++lg+f  +e+Aaka++ a+++l+g
  GSBRNA2T00065055001 37 PVYHGVRKRR-WGKWVSEIREPRK---KSRIWLGSFPIPEMAAKAYDVAALCLKG 87
                         68*****887.**********843...6*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.8E-123787IPR001471AP2/ERF domain
PROSITE profilePS5103222.8533895IPR001471AP2/ERF domain
SMARTSM003805.2E-3338101IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.3E-303896IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-203897IPR016177DNA-binding domain
CDDcd000186.44E-303996No hitNo description
PRINTSPR003675.5E-123950IPR001471AP2/ERF domain
PRINTSPR003675.5E-127797IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MKLSPPPLTN NEQPAADTAV KSCGGGGRET FSATRHPVYH GVRKRRWGKW VSEIREPRKK  60
SRIWLGSFPI PEMAAKAYDV AALCLKGRKA QLNFPDEIDD LPRPSTCTAR DIQVAAAKAA  120
NAVKIIKTGD DVANIGDGDD FWEGIELPEL MMTRCGWSPE PFVAGDDATW LVDEDSYQYQ  180
FMACL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A8e-1636991276Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00120DAPTransfer from AT1G01250Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00065055001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3531060.0AK353106.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-20-O04.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013602946.11e-137PREDICTED: ethylene-responsive transcription factor ERF023-like
RefseqXP_013670388.11e-137ethylene-responsive transcription factor ERF023-like
SwissprotQ1ECI21e-106ERF23_ARATH; Ethylene-responsive transcription factor ERF023
TrEMBLA0A078HK181e-135A0A078HK18_BRANA; BnaCnng08620D protein
TrEMBLA0A0D3DZD51e-135A0A0D3DZD5_BRAOL; Uncharacterized protein
TrEMBLA0A3P6GIM31e-135A0A3P6GIM3_BRAOL; Uncharacterized protein
STRINGBo8g117810.11e-136(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM76592439
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01250.11e-105ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]