PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00065006001

Common Name

GSBRNA2T00065006001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bHLH

Protein Properties

Length: 158aa MW: 18064.1 Da PI: 9.9373

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00065006001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	18.3	4.1e-06	16	63	2	54
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r++ n rE+ RR r+++ f L +++ + ++l + +A+ Y+ +L GSBRNA2T00065006001 16 REKRNLREKERRMRMKDLFCLLSSHVSPT-----RRLPVPQLIDQATSYMIQL 63 8899**********************986.....6788788888888887766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	10.976	14	63	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	5.5E-11	14	84	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.3E-6	16	77	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 158 aa Download sequence Send to blast
MEREKEIGEG SSLSLREKRN LREKERRMRM KDLFCLLSSH VSPTRRLPVP QLIDQATSYM 60 IQLKEKVTYL KEKKKTLLEG EVGCRSERSS SSLLPKLSIH SRGSIIEMNL IISVNMKRLT 120 LHELLGVFEE EGAQVMSANL QNLNDRTAYT IIAQVYV*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	20	25	LREKER

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00065006001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013585283.1	1e-108	PREDICTED: uncharacterized protein LOC106294263 isoform X1
Refseq	XP_013651518.1	1e-108	transcription factor bHLH167-like
Refseq	XP_022558689.1	1e-108	transcription factor bHLH167-like
Swissprot	F4I4E1	7e-79	BH167_ARATH; Transcription factor bHLH167
TrEMBL	A0A078HMA5	1e-109	A0A078HMA5_BRANA; BnaC05g08060D protein
TrEMBL	A0A0D3C941	1e-109	A0A0D3C941_BRAOL; Uncharacterized protein
STRING	Bo5g012080.1	1e-110	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2382	21	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10586.1	4e-51	bHLH family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]