PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00064610001

Common Name

GSBRNA2T00064610001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Trihelix

Protein Properties

Length: 320aa MW: 34952.1 Da PI: 5.4071

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00064610001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	94	1.5e-29	47	140	1	85
trihelix 1 rWtkqevlaLiearremeerlrrgk.........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpy 81 rWt+qe+l+Li+++r e+r+rrg+ +++p+W++vs+++r++g++r+p+qC+++w+nl+++ykkike+e++ ++e++s +++ GSBRNA2T00064610001 47 RWTRQEILVLIQGKRVAENRVRRGRaagmalgsgQMEPKWASVSSYCRRHGVNRGPVQCRKRWSNLAGDYKKIKEWESQVKEETESYWVM 136 8********************97778888888****************************************************99 PP trihelix 82 fdql 85 +++ GSBRNA2T00064610001 137 RNDV 140 9886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	6.4	47	113	IPR017877	Myb-like domain
Pfam	PF13837	4.2E-13	47	137	No hit	No description
Gene3D	G3DSA:1.10.10.60	5.6E-5	47	112	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 320 aa Download sequence Send to blast
MALEQQLGLA VTAVDGDGNG NGGGGGENSA PSNEGGDDSV KTARLPRWTR QEILVLIQGK 60 RVAENRVRRG RAAGMALGSG QMEPKWASVS SYCRRHGVNR GPVQCRKRWS NLAGDYKKIK 120 EWESQVKEET ESYWVMRNDV RRERKLPGFF DKEVYDVVDG GVVPPALALG LAPAATSTSV 180 EPEGVLSELE RREPAPNKLL QDVIDKEKQA VCGADDQGLV KEKDAEAANP EAGSTSQEAR 240 KRKRTSVSED EEKEEEATKS MDNQLIQILE RNGQLLAAQL EVQNTNLKLD REQRKDHGDN 300 LVAVLSKLAD AVAKIADKL*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.6150	0.0	seed

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional repressor that binds DNA and plays a negative role in regulating microbe-associated molecular patterns-(MAMPs, e.g. flg22, elf18, chitin, and LPS) triggered immunity (PTI) by negatively regulating immune gene expression. {ECO:0000269\|PubMed:25770109}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00064610001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189292	0.0	AC189292.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB026E08, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013634192.1	0.0	PREDICTED: uncharacterized protein LOC106339873
Swissprot	Q8VZ20	1e-166	ASR3_ARATH; Trihelix transcription factor ASR3
TrEMBL	A0A078HH93	0.0	A0A078HH93_BRANA; BnaA04g19580D protein
STRING	Bo4g182020.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6557	28	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33550.1	1e-144	Trihelix family protein

Publications ? help Back to Top
Vidal EA, et al. Integrated RNA-seq and sRNA-seq analysis identifies novel nitrate-responsive genes in Arabidopsis thaliana roots. BMC Genomics, 2013. 14: p. 701 [PMID:24119003] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]