PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00064499001
Common NameGSBRNA2T00064499001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family SAP
Protein Properties Length: 458aa    MW: 50479.8 Da    PI: 7.05
Description SAP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00064499001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SAP720.12.1e-21914561454
                  SAP   1 mssssssssseseegseggeggdassgesegpsssrqr.aanevwpePflealatqvaidasrslGrlaaasalanvfqvcstwravsrs 89 
                          msssss+s++ +++g  ++   ++s+g +e+ps sr+r +an+vwpePfle+la+qva+das s+  + aa+alanvf+vc+ w+avsrs
  GSBRNA2T00064499001   1 MSSSSSASDNGDSSGGLSS-VAGRSGGVFEAPSPSRPRhSANDVWPEPFLESLAVQVAVDASLSTSPVDAAPALANVFRVCTMWQAVSRS 89 
                          7888887777766665444.4567789**********9899************************************************* PP

                  SAP  90 dllwqrltrriWrrtkllrdtWreeyiyrhrtarnfrtrrysyvtlqfdpadvdedndadalsCrclalsdkylaaGfadGavrlfdlet 179
                          d+lwq l++++W+rt+l++dtWr+e+iyrhrtarnf+tr y +vtl+fdpadvde   +d+lsCrcl lsd ylaaGfadG+vrlf+l++
  GSBRNA2T00064499001  90 DHLWQLLSHQVWARTRLMHDTWRDEFIYRHRTARNFQTRSYVHVTLNFDPADVDE---PDSLSCRCLRLSDLYLAAGFADGTVRLFHLNS 176
                          ***************************************************9998...689***************************** PP

                  SAP 180 rlhvstflpqhrdrlGrfsravsGivisdsrlvfatldGdihvavidgagaaaarrallGdvvndGalvdfaGsgrWwvGlyaGvpGraf 269
                          rlhv+t++p  rdr+GrfsravsGivisdsrlvfat+dGdihva+i+g+g +++r+a++Gd+vndGalvdf+G+gr+wvGl+aGvpGraf
  GSBRNA2T00064499001 177 RLHVRTLRPPPRDRFGRFSRAVSGIVISDSRLVFATMDGDIHVAEINGVG-SHTRTAFVGDIVNDGALVDFTGCGRYWVGLFAGVPGRAF 265
                          ************************************************88.89************************************* PP

                  SAP 270 hiWdaeteelvfvGGsltdPeavmGWhmlteltelvGrvrvteretavaCtslrlvvfdlrnqgvvlreeeer.rGlivssldasneayv 358
                          hiWd+  ee++fvGGsltdPeavmGWh+ltelt ++Gr+r+++ etavaCt++r+ v+dlrnqgv+++e+ee+ rGliv+++da+++ayv
  GSBRNA2T00064499001 266 HIWDCINEETTFVGGSLTDPEAVMGWHTLTELTMSLGRLRISGGETAVACTRWRITVIDLRNQGVIIAEDEEQrRGLIVTGFDANDQAYV 355
                          ******************************************************************99887776**************** PP

                  SAP 359 vvdsrGvatvrrvenleevcrfrvrg.aqrgvlgCvnggyalvyaggvlrvWeiekkegylyslrervgevnalvaddrhvavsss.... 443
                          ++dsrG+a+vrrv + e+vc+frv++ aqr+v+gCvn+ +al++aggv+rvW++++ ++ylys+rervgev+a+va+drhvav+ss    
  GSBRNA2T00064499001 356 RMDSRGNAIVRRVRTQETVCEFRVSRaAQRRVMGCVNRLHALMCAGGVMRVWDVQRGGEYLYSFRERVGEVDAFVANDRHVAVASSssta 445
                          ************************999********************************************************9984444 PP

                  SAP 444 dgtihlldfga 454
                           +tihl+dfga
  GSBRNA2T00064499001 446 VSTIHLWDFGA 456
                          468*******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF813833.6E-672123IPR001810F-box domain
Gene3DG3DSA:1.20.1280.504.5E-473109No hitNo description
Gene3DG3DSA:2.130.10.106.6E-10150236IPR015943WD40/YVTN repeat-like-containing domain
SuperFamilySSF509781.88E-12150222IPR017986WD40-repeat-containing domain
SuperFamilySSF509781.88E-12283453IPR017986WD40-repeat-containing domain
Gene3DG3DSA:2.130.10.106.6E-10359454IPR015943WD40/YVTN repeat-like-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009554Biological Processmegasporogenesis
GO:0009908Biological Processflower development
GO:0030163Biological Processprotein catabolic process
GO:0046622Biological Processpositive regulation of organ growth
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 458 aa     Download sequence    Send to blast
MSSSSSASDN GDSSGGLSSV AGRSGGVFEA PSPSRPRHSA NDVWPEPFLE SLAVQVAVDA  60
SLSTSPVDAA PALANVFRVC TMWQAVSRSD HLWQLLSHQV WARTRLMHDT WRDEFIYRHR  120
TARNFQTRSY VHVTLNFDPA DVDEPDSLSC RCLRLSDLYL AAGFADGTVR LFHLNSRLHV  180
RTLRPPPRDR FGRFSRAVSG IVISDSRLVF ATMDGDIHVA EINGVGSHTR TAFVGDIVND  240
GALVDFTGCG RYWVGLFAGV PGRAFHIWDC INEETTFVGG SLTDPEAVMG WHTLTELTMS  300
LGRLRISGGE TAVACTRWRI TVIDLRNQGV IIAEDEEQRR GLIVTGFDAN DQAYVRMDSR  360
GNAIVRRVRT QETVCEFRVS RAAQRRVMGC VNRLHALMCA GGVMRVWDVQ RGGEYLYSFR  420
ERVGEVDAFV ANDRHVAVAS SSSTAVSTIH LWDFGAP*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in inflorescence and floral meristems, young floral organ primordia, and later in ovule primordia.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator involved in the specification of floral identity. Acts as A class cadastral protein by repressing the C class floral homeotic gene AGAMOUS in the external flower organs in association with APETALA2 and other repressors. Is required to maintain floral meristem identity in concert with AGAMOUS. Interacts also with APETALA2 to ensure the normal development of ovule.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00064499001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013635463.10.0PREDICTED: transcriptional regulator STERILE APETALA
SwissprotQ9FKH10.0SAP_ARATH; Transcriptional regulator STERILE APETALA
TrEMBLA0A078HL960.0A0A078HL96_BRANA; BnaC04g29800D protein
STRINGBo4g135850.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM110182634
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G35770.10.0SAP family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Li N, et al.
    STERILE APETALA modulates the stability of a repressor protein complex to control organ size in Arabidopsis thaliana.
    PLoS Genet., 2018. 14(2): p. e1007218
    [PMID:29401459]