PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00064250001
Common NameGSBRNA2T00064250001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family WRKY
Protein Properties Length: 199aa    MW: 22871.4 Da    PI: 4.6534
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00064250001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY66.44.4e-2142103159
                          ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                          l+Dg++WrKYGqK++k s + r YYrC++a   +C++kk+ ++ ++ p+v  +tY g+H ++
  GSBRNA2T00064250001  42 LNDGFSWRKYGQKKIKASSHQRCYYRCAYAkdrNCNAKKREQQIQDSPSVYRTTYVGKHICD 103
                          58***************************99999*************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081119.72637105IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.4E-2137103IPR003657WRKY domain
SuperFamilySSF1182901.96E-2139104IPR003657WRKY domain
SMARTSM007748.0E-3142104IPR003657WRKY domain
PfamPF031065.6E-2143102IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MFHGADKSCK APPGTARKSS KNNSNEEECL EQYSHDSPTP LLNDGFSWRK YGQKKIKASS  60
HQRCYYRCAY AKDRNCNAKK REQQIQDSPS VYRTTYVGKH ICDVNVFSEP DDDIANGSKM  120
IRFDKMDQAM PDSVMPRLAP VEQQAITIEE DTDQIMNLEF DINEFLVDDD QLWEYQFPSF  180
SPGFLDDLSE FDHNPFLV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A3e-1542102868OsWRKY45
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00064250001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF4300700.0KF430070.1 Brassica rapa WRKY transcription factor 64 (WRKY64) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018511646.11e-139PREDICTED: probable WRKY transcription factor 63 isoform X1, partial
SwissprotQ93WV73e-59WRK67_ARATH; Probable WRKY transcription factor 67
TrEMBLA0A078HK071e-148A0A078HK07_BRANA; BnaA02g19560D protein
STRINGBra008454.1-P1e-147(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56091847
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66550.23e-63WRKY DNA-binding protein 67
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]