PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00064249001 | ||||||||
Common Name | GSBRNA2T00064249001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | WRKY | ||||||||
Protein Properties | Length: 199aa MW: 22875.3 Da PI: 4.6534 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 66.4 | 4.4e-21 | 42 | 103 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 l+Dg++WrKYGqK++k s + r YYrC++a +C++kk+ ++ ++ p+v +tY g+H ++ GSBRNA2T00064249001 42 LNDGFSWRKYGQKKIKASSHQRCYYRCAYAkdrNCNAKKREQQIQDSPSVYRTTYVGKHICD 103 58***************************99999*************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 19.726 | 37 | 105 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 1.3E-21 | 37 | 103 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.48E-21 | 39 | 104 | IPR003657 | WRKY domain |
SMART | SM00774 | 8.0E-31 | 42 | 104 | IPR003657 | WRKY domain |
Pfam | PF03106 | 5.6E-21 | 43 | 102 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 199 aa Download sequence Send to blast |
MFHGADKSCK ATPGTARKSS KNNSNEEECL EQYSHDSPTP LLNDGFSWRK YGQKKIKASS 60 HQRCYYRCAY AKDRNCNAKK REQQIQDSPS VYRTTYVGKH ICDVNVFSEP DDDIANGSKM 120 IRFDKMDQAM PDSVMPRLAP VEQQAITIEE DTDQIMNLEF DINEFLVDDD QLWEYQFPSF 180 SPGFLDDLSE FDHNPFLV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ir8_A | 3e-15 | 42 | 102 | 8 | 68 | OsWRKY45 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00064249001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF430070 | 0.0 | KF430070.1 Brassica rapa WRKY transcription factor 64 (WRKY64) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018511646.1 | 1e-140 | PREDICTED: probable WRKY transcription factor 63 isoform X1, partial | ||||
Swissprot | Q93WV7 | 2e-59 | WRK67_ARATH; Probable WRKY transcription factor 67 | ||||
TrEMBL | A0A078HL69 | 1e-148 | A0A078HL69_BRANA; BnaA02g19570D protein | ||||
STRING | Bra008454.1-P | 1e-148 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5609 | 18 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66550.2 | 3e-63 | WRKY DNA-binding protein 67 |
Publications ? help Back to Top | |||
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