PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00064167001
Common NameGSBRNA2T00064167001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family WRKY
Protein Properties Length: 1047aa    MW: 116660 Da    PI: 9.7041
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00064167001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY100.11.4e-31161217259
                          --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          dDgynWrKYGqK++kg e+prsYYrCt+ +Cpvkkkvers+ d+++++i+Y+g+H+he
  GSBRNA2T00064167001 161 DDGYNWRKYGQKPIKGCEYPRSYYRCTHVNCPVKKKVERSS-DGQITQIIYKGQHDHE 217
                          8****************************************.***************8 PP
2WRKY103.11.6e-32305363159
                          ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          ldDgy+WrKYGqK+vkg+++prsYY+Ct+a+C+v+k+ver+++d k+v++tYeg+Hnh+
  GSBRNA2T00064167001 305 LDDGYRWRKYGQKVVKGNPHPRSYYKCTTANCTVRKHVERASTDVKAVITTYEGKHNHD 363
                          59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.0E-28152219IPR003657WRKY domain
SuperFamilySSF1182903.79E-25158219IPR003657WRKY domain
SMARTSM007741.1E-35160218IPR003657WRKY domain
PfamPF031062.2E-24161216IPR003657WRKY domain
PROSITE profilePS5081124.076161219IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.5E-35290365IPR003657WRKY domain
SuperFamilySSF1182901.7E-28297365IPR003657WRKY domain
PROSITE profilePS5081137.711300365IPR003657WRKY domain
SMARTSM007741.3E-37305364IPR003657WRKY domain
PfamPF031069.6E-25306363IPR003657WRKY domain
SuperFamilySSF561127.01E-90522818IPR011009Protein kinase-like domain
Gene3DG3DSA:3.30.200.206.0E-31522625No hitNo description
SMARTSM002206.0E-94527812IPR000719Protein kinase domain
PROSITE profilePS5001145.898527812IPR000719Protein kinase domain
CDDcd078405.83E-137527812No hitNo description
PfamPF000693.0E-70527812IPR000719Protein kinase domain
PROSITE patternPS001070533556IPR017441Protein kinase, ATP binding site
Gene3DG3DSA:1.10.510.103.9E-57626881No hitNo description
PROSITE patternPS001080647659IPR008271Serine/threonine-protein kinase, active site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006468Biological Processprotein phosphorylation
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0004672Molecular Functionprotein kinase activity
GO:0005524Molecular FunctionATP binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1047 aa     Download sequence    Send to blast
MAVEDDVSSM RTTTLVAPTR PTITVPQRPP AIETAAYYFG GGDGLSLSPG PLSFVSSLFV  60
DSFPDVLTPD NQRTTSPSSL LTSPMFFPPQ QSPTQTVFIQ PQSQPKRPDS FPNQMPPSTS  120
TAVHGRRSCK APQADRYNNP AANNNNTNRS YNVVNVDKPA DDGYNWRKYG QKPIKGCEYP  180
RSYYRCTHVN CPVKKKVERS SDGQITQIIY KGQHDHERPQ NRRGGGGGVR DSGEIGDIHY  240
IGGVGHIESS DDSGYANDHD NDNDDDNEDI PGSKKRKIDG GVSTTHRSVT EPKIVVQTRS  300
EVDLLDDGYR WRKYGQKVVK GNPHPRSYYK CTTANCTVRK HVERASTDVK AVITTYEGKH  360
NHDVPAARNG TAAISAIAGT SDHHRIVLPA LDPFTRPGSI LTPPGNFLTI SSSIMGCFNS  420
KHSSPPPRPI RRRSDTAANR GHPQNTHKPH VLPTPPSHRR VVNSSPKKHR NNDDDAPRSK  480
TTGVSLRSGL PHGNVEAEQV AAGWPSWLTS AAPEAVHGLV PLRAEDFEKR EKIGQGTYSN  540
VFRACEVSTG RVMALKKIRV QNFDTENIRF IAREIMILRR LDHPNIMKLE GIIASRNSNS  600
MYFVFDYMEH DLEGLCSSPD INFTEAQIKC YMQQLLLAVE HCHLRGIMHR DIKAANILVN  660
NKGVLKLADF GLANIVTPRN KNQLTSRVVT LWYRAPELLM GSTSYSVSVD LWSVGCVFAE  720
ILTGRPPLKG RTEIEQLHKI YKLCGSPDEE LWRNNKLHPQ TKMFGQQHQY EGCLRETFEE  780
FPKTAVNLLE NLFSIDPEKR GTASSALMSE YFNTKPYACD PSTLPKYPPN KEMDAKYREE  840
LQRRRRATIK KRDNLVSKKT GKSRRTIKDP LSKLPTQQQE AKKEAETEII VQTPSETSQA  900
TTRSEFPYTA LSQATAPASG FAWAGAKKRK ENDAASTLTY NQPAGSASHV SGMSMAFAKN  960
TFGLTINENR PFLRPHVSLD SSGDILLYPN AHHKKEEDNM SQLNSDLRNV GANPKIFQTN  1020
GMNEILRRTE SDARVAVRRP PRIERG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4nst_A3e-7053384821341Cyclin-dependent kinase 12
4nst_C3e-7053384821341Cyclin-dependent kinase 12
5efq_A2e-7053385519345Cyclin-dependent kinase 13
5efq_C2e-7053385519345Cyclin-dependent kinase 13
6ckx_A3e-7053384821341Cyclin-dependent kinase 12
6ckx_C3e-7053384821341Cyclin-dependent kinase 12
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.3030.0bud| flower| microspore-derived embryo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00064167001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF4300650.0KF430065.1 Brassica rapa WRKY transcription factor 58 (WRKY58) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001288975.10.0probable WRKY transcription factor 58
TrEMBLA0A078HIQ10.0A0A078HIQ1_BRANA; BnaA05g34110D protein
STRINGBra039147.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13105810
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01080.11e-131WRKY DNA-binding protein 58
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]