PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00063860001 | ||||||||
Common Name | GSBRNA2T00063860001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | NF-YA | ||||||||
Protein Properties | Length: 181aa MW: 20509.3 Da PI: 11.198 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 104.5 | 9.3e-33 | 43 | 99 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 ++p+YVNaKQyq+Il+RRq+Rak+e ekkl +ksrkpylheSRh+hA+rRpRg+gGrF GSBRNA2T00063860001 43 QDPVYVNAKQYQAILRRRQARAKAELEKKL-IKSRKPYLHESRHQHAIRRPRGNGGRF 99 68****************************.**************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 1.5E-35 | 41 | 102 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 36.088 | 42 | 102 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 2.0E-24 | 45 | 67 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 3.9E-28 | 45 | 99 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE pattern | PS00686 | 0 | 47 | 67 | IPR018362 | CCAAT-binding factor, conserved site |
PRINTS | PR00616 | 2.0E-24 | 76 | 99 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0016602 | Cellular Component | CCAAT-binding factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 181 aa Download sequence Send to blast |
MATVSRQRIG DNICQGNPMK RLTYVPYGGM PHSRMPLPPE MAQDPVYVNA KQYQAILRRR 60 QARAKAELEK KLIKSRKPYL HESRHQHAIR RPRGNGGRFA KKTNTKAAQQ KAGEKRNACR 120 TQSPTSSSSD QPEAWNDENR TQSKEMQSTA CKRRKEADCS GQQWNIISSN HPSQARLAIK 180 * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4awl_A | 3e-19 | 43 | 99 | 2 | 58 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bna.2178 | 1e-148 | bud| flower| leaf| microspore| seed |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in inflorescence, stems, flowers and siliques. {ECO:0000269|PubMed:11867211}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00063860001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BNU33884 | 1e-145 | U33884.1 Brassica napus clone bncbf-b1 CCAAT-binding factor B subunit homolog mRNA, complete cds. | |||
GenBank | BNU33885 | 1e-145 | U33885.1 Brassica napus clone bncbf-b2 CCAAT-binding factor B subunit homolog mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018511878.1 | 1e-133 | PREDICTED: nuclear transcription factor Y subunit A-9-like | ||||
Swissprot | Q945M9 | 3e-89 | NFYA9_ARATH; Nuclear transcription factor Y subunit A-9 | ||||
TrEMBL | A0A078HG42 | 1e-131 | A0A078HG42_BRANA; BnaA01g25500D protein | ||||
TrEMBL | M4E559 | 1e-131 | M4E559_BRARP; Uncharacterized protein | ||||
STRING | Bra023913.1-P | 1e-132 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM13268 | 18 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G20910.1 | 3e-75 | nuclear factor Y, subunit A9 |
Publications ? help Back to Top | |||
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