PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00063835001
Common NameGSBRNA2T00063835001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GATA
Protein Properties Length: 368aa    MW: 40681.6 Da    PI: 7.3464
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00063835001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA54.12.1e-17293328134
                 GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkg 34 
                          C++Cgt++  Tp++Rrgp+g++tLCnaCGl+++ kg
  GSBRNA2T00063835001 293 CRHCGTSEksTPMMRRGPEGPRTLCNACGLMWANKG 328
                          *********************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009791.9E-11147182IPR010399Tify domain
PROSITE profilePS5132014.134147182IPR010399Tify domain
PfamPF062001.3E-10150181IPR010399Tify domain
PfamPF062032.1E-15217259IPR010402CCT domain
PROSITE profilePS5101713.066217259IPR010402CCT domain
PROSITE profilePS501149.222287335IPR000679Zinc finger, GATA-type
SMARTSM004017.1E-11287340IPR000679Zinc finger, GATA-type
SuperFamilySSF577168.55E-13290345No hitNo description
Gene3DG3DSA:3.30.50.101.6E-15292334IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.82E-14293335No hitNo description
PROSITE patternPS003440293320IPR000679Zinc finger, GATA-type
PfamPF003202.9E-15293328IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MRSFLRFNLD MSFISTVVFG EFIVDDKRSN EVKKFWLRNL FVLLCSRFTK LQEEIVRSGS  60
GDAAPFVVKS ALRMSETMDD DLHGNNGGMH NGGGVQDPNH SMHVQYDHHG MMDEQHADDV  120
MNEGLEADIP SHLGNTSDHR GEVVDRGSEN GDQLTLSFQG QVYVFDRVLP EKVQAVLLLL  180
GGREVPNTVP TNVGSPHQNN RVLGLSGTPQ RFSAPQRQAS LLRFREKRKG RNFDKTIRYT  240
VRKEVALRMQ RKKGQFTSAK SSNEDSASNG SDWGSGQSWA LEGTETQKPE ALCRHCGTSE  300
KSTPMMRRGP EGPRTLCNAC GLMWANKGAL RDLSKAPPPP TAQNLPANKI DESILEAELA  360
GDISNSQ*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.76370.0flower| root| seed
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Predominantly expressed in shoot apices, inflorescences and roots. {ECO:0000269|PubMed:14966217}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00063835001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013640468.10.0GATA transcription factor 24-like isoform X1
SwissprotQ8GXL71e-163GAT24_ARATH; GATA transcription factor 24
TrEMBLA0A078HHF30.0A0A078HHF3_BRANA; BnaA01g25320D protein
STRINGBra023900.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36842659
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.11e-161ZIM-like 1
Publications ? help Back to Top
  1. Haas BJ, et al.
    Full-length messenger RNA sequences greatly improve genome annotation.
    Genome Biol., 2002. 3(6): p. RESEARCH0029
    [PMID:12093376]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]