PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bHLH

Protein Properties

Length: 347aa MW: 38468.9 Da PI: 4.8346

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00063704001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	32	2.2e-10	272	312	10	55
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++RR+riN+++ L+ l+P+ +K++ +++Le+Av+Y+k Lq GSBRNA2T00063704001 272 QKRRERINERLKILQNLVPNG-----TKVDISTMLEEAVQYVKFLQ 312 89***************97.....8****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.183	262	311	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.3E-8	268	317	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	8.4E-12	272	321	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	9.16E-13	272	327	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.31E-10	272	316	No hit	No description
Pfam	PF00010	8.9E-8	272	312	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 347 aa Download sequence Send to blast
MEAMGEWSTG LGGMYTDEAD FMNQLLASYD QPCGVSSPET TAPAAAYHPQ NAHLTGGFCF 60 SQESSSYSAG HSGYYAVMPP REENNNGMED VTINTNLYLV GEEMCECEVA EYPAKSLLSL 120 ETVEENQDDN KRSLETEDDQ KLFNACESSK KRSRAITTDK NKRASKTRKT KKIMEMSDNN 180 NNSGGEVQTE KAGGERNTKA LKIQKTYYSD DEANGGDTSS CKEGGEDCKA LNLNGKTRAS 240 RGAATDPQSL YAREISYVRL KTKTKTDLMT VQKRRERINE RLKILQNLVP NGTKVDISTM 300 LEEAVQYVKF LQLQIKLLSS DDLWMYAPIA YNGMDIGLDM KLNSLI*

Sequence ? help Back to Top

Protein Sequence Length: 347 aa Download sequence Send to blast

MEAMGEWSTG LGGMYTDEAD FMNQLLASYD QPCGVSSPET TAPAAAYHPQ NAHLTGGFCF  60
SQESSSYSAG HSGYYAVMPP REENNNGMED VTINTNLYLV GEEMCECEVA EYPAKSLLSL  120
ETVEENQDDN KRSLETEDDQ KLFNACESSK KRSRAITTDK NKRASKTRKT KKIMEMSDNN  180
NNSGGEVQTE KAGGERNTKA LKIQKTYYSD DEANGGDTSS CKEGGEDCKA LNLNGKTRAS  240
RGAATDPQSL YAREISYVRL KTKTKTDLMT VQKRRERINE RLKILQNLVP NGTKVDISTM  300
LEEAVQYVKF LQLQIKLLSS DDLWMYAPIA YNGMDIGLDM KLNSLI*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00063704001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AJ577584	7e-72	AJ577584.1 Arabidopsis thaliana mRNA for putative bHLH084 transcription factor (bHLH084 gene).
GenBank	DQ446497	7e-72	DQ446497.1 Arabidopsis thaliana clone pENTR221-At2g14760 basic helix-loop-helix protein/bHLH protein (At2g14760) mRNA, complete cds.
GenBank	DQ652985	7e-72	DQ652985.1 Arabidopsis thaliana clone 0000009730_0000007191 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009123213.1	0.0	PREDICTED: transcription factor bHLH84 isoform X1
Swissprot	Q7XHI9	1e-167	BH084_ARATH; Transcription factor bHLH84
TrEMBL	A0A078HHL2	0.0	A0A078HHL2_BRANA; BnaA09g08420D protein
STRING	Bra039819.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2834	26	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G14760.3	1e-168	bHLH family protein

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]