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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00063704001 | ||||||||
Common Name | GSBRNA2T00063704001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | bHLH | ||||||||
Protein Properties | Length: 347aa MW: 38468.9 Da PI: 4.8346 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 32 | 2.2e-10 | 272 | 312 | 10 | 55 |
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++RR+riN+++ L+ l+P+ +K++ +++Le+Av+Y+k Lq GSBRNA2T00063704001 272 QKRRERINERLKILQNLVPNG-----TKVDISTMLEEAVQYVKFLQ 312 89*****************97.....8******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.183 | 262 | 311 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.3E-8 | 268 | 317 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 8.4E-12 | 272 | 321 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 9.16E-13 | 272 | 327 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.31E-10 | 272 | 316 | No hit | No description |
Pfam | PF00010 | 8.9E-8 | 272 | 312 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 347 aa Download sequence Send to blast |
MEAMGEWSTG LGGMYTDEAD FMNQLLASYD QPCGVSSPET TAPAAAYHPQ NAHLTGGFCF 60 SQESSSYSAG HSGYYAVMPP REENNNGMED VTINTNLYLV GEEMCECEVA EYPAKSLLSL 120 ETVEENQDDN KRSLETEDDQ KLFNACESSK KRSRAITTDK NKRASKTRKT KKIMEMSDNN 180 NNSGGEVQTE KAGGERNTKA LKIQKTYYSD DEANGGDTSS CKEGGEDCKA LNLNGKTRAS 240 RGAATDPQSL YAREISYVRL KTKTKTDLMT VQKRRERINE RLKILQNLVP NGTKVDISTM 300 LEEAVQYVKF LQLQIKLLSS DDLWMYAPIA YNGMDIGLDM KLNSLI* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00063704001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AJ577584 | 7e-72 | AJ577584.1 Arabidopsis thaliana mRNA for putative bHLH084 transcription factor (bHLH084 gene). | |||
GenBank | DQ446497 | 7e-72 | DQ446497.1 Arabidopsis thaliana clone pENTR221-At2g14760 basic helix-loop-helix protein/bHLH protein (At2g14760) mRNA, complete cds. | |||
GenBank | DQ652985 | 7e-72 | DQ652985.1 Arabidopsis thaliana clone 0000009730_0000007191 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009123213.1 | 0.0 | PREDICTED: transcription factor bHLH84 isoform X1 | ||||
Swissprot | Q7XHI9 | 1e-167 | BH084_ARATH; Transcription factor bHLH84 | ||||
TrEMBL | A0A078HHL2 | 0.0 | A0A078HHL2_BRANA; BnaA09g08420D protein | ||||
STRING | Bra039819.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2834 | 26 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G14760.3 | 1e-168 | bHLH family protein |
Publications ? help Back to Top | |||
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