PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00063525001
Common NameGSBRNA2T00063525001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 254aa    MW: 29381.2 Da    PI: 4.4742
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00063525001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH22.61.9e-07165209655
                          HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +++ r RR+ri ++ +eL +l+P       +Kl+ ae+ + A +Y+k Lq
  GSBRNA2T00063525001 165 SIAARERRRRIAEKTHELTKLIPGG-----QKLNTAEMFQAAAKYVKFLQ 209
                          567899*****************86.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474598.77E-11151219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.335159208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.3E-10163220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.7E-5165209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.9E-8165214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.25E-4181212No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MSSMDCLSHF FDWDQPIQLQ DCFIPDVDIT ILETDNFFFQ SQPQLQFQQP LFQEEAPLEL  60
TDLDYFCDQF LPPQETCLPY PKSEIFNETH DLDSFLPAPK LQKLVNSSYH CNPNFFNYYQ  120
ELDLAPEPSI FPEFRVPDFP LEFKVDRGDE DRSHGTKKPT LSSQSIAARE RRRRIAEKTH  180
ELTKLIPGGQ KLNTAEMFQA AAKYVKFLQS QVGILQMMQT AKKTHTSDVE IETRVLLGSQ  240
AIQEKLSTDE VCLV
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00063525001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009143737.10.0PREDICTED: transcription factor bHLH53
RefseqXP_022570536.10.0transcription factor bHLH53-like
SwissprotQ84RD01e-115BH053_ARATH; Transcription factor bHLH53
TrEMBLA0A078JNX80.0A0A078JNX8_BRANA; BnaAnng24240D protein (Fragment)
TrEMBLA0A397ZC290.0A0A397ZC29_BRACM; Uncharacterized protein
TrEMBLM4CMF10.0M4CMF1_BRARP; Uncharacterized protein
STRINGBra005389.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM45472552
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34820.11e-101bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]