PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00063487001
Common NameGSBRNA2T00063487001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family WRKY
Protein Properties Length: 487aa    MW: 53493 Da    PI: 8.4518
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00063487001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY106.11.8e-33229285259
                          --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          dDgynWrKYGqK+vkgs+fprsYY+Ct+  Cpvkkkvers  d++v+ei+Y+g+Hnhe
  GSBRNA2T00063487001 229 DDGYNWRKYGQKQVKGSDFPRSYYKCTHGACPVKKKVERSV-DGQVTEIIYKGQHNHE 285
                          8****************************************.***************8 PP
2WRKY107.37.8e-34389447159
                          ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          ldDgy+WrKYGqK+vkg+++prsYY+Ct++gC+v+k+ver+a+dpk+v++tYeg+Hnh+
  GSBRNA2T00063487001 389 LDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCRVRKHVERAANDPKAVITTYEGKHNHD 447
                          59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.4E-29220287IPR003657WRKY domain
PROSITE profilePS5081123.973223287IPR003657WRKY domain
SuperFamilySSF1182901.22E-25226287IPR003657WRKY domain
SMARTSM007747.6E-36228286IPR003657WRKY domain
PfamPF031061.6E-25229285IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.0E-37374449IPR003657WRKY domain
SuperFamilySSF1182907.45E-30381449IPR003657WRKY domain
PROSITE profilePS5081138.147384449IPR003657WRKY domain
SMARTSM007742.7E-39389448IPR003657WRKY domain
PfamPF031063.1E-26390447IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 487 aa     Download sequence    Send to blast
MAEKEEEEQQ QTKQSLTSKS STGGASRPTI SLPPRPFGEM FYSGGVGFSG FSPGPMTLVS  60
NMFSDPDEFK SFSQLVAGAV ASPAAAAVVA SAHQPPVSSV GGGGDSLLDP RIKQNRPTGL  120
MITQPPGMFT VPAGLSPATL LDSPSFFGLF SPIQGSFGTT HQQALAQVTA QAVHGNNVQI  180
QSESSTQQQQ TSLTEVPSFS APVQDQRDNS EVTVYEHRSQ PQNADKPADD GYNWRKYGQK  240
QVKGSDFPRS YYKCTHGACP VKKKVERSVD GQVTEIIYKG QHNHEPPQNN KRGRDNDNNN  300
NNNNGSCNSL NKSKRDQETS QVTTTEQISE ASDSEEHTKM SLIPREDSNK TFECCRNTEV  360
RVSEPVSSSN RTVTEPRIIV QTKSEVDLLD DGYRWRKYGQ KVVKGNPYPR SYYKCTTPGC  420
RVRKHVERAA NDPKAVITTY EGKHNHDIPA SRTSSHQLRP NNNLSTVNLN QQQTVARLRL  480
KEEQIT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A6e-43229450878Probable WRKY transcription factor 4
2lex_A6e-43229450878Probable WRKY transcription factor 4
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: In young, mature and senescent leaves. {ECO:0000269|PubMed:11722756}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00063487001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM5931350.0KM593135.1 Brassica oleracea var. capitata WRKY transcription factor (WRKY17) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001288910.10.0probable WRKY transcription factor 3
SwissprotQ9ZQ700.0WRKY3_ARATH; Probable WRKY transcription factor 3
TrEMBLA0A078HHJ40.0A0A078HHJ4_BRANA; BnaC02g34990D protein
STRINGBra026554.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15342792
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03340.10.0WRKY DNA-binding protein 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  3. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]