PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00063329001
Common NameGSBRNA2T00063329001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family RAV
Protein Properties Length: 344aa    MW: 39571 Da    PI: 8.3975
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00063329001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP234.93.9e-1157103254
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54 
                          +ykGV + + + rW A+I++      +kr++lg+f +a eAa a + a  kl+
  GSBRNA2T00063329001  57 KYKGVVQQP-NSRWGAQIYVD-----HKRIWLGTFSSAAEAAMAFDSASIKLR 103
                          8********.8*********3.....4*******************9999987 PP
2B379.14.5e-25180270183
                          EEEE-..-HHHHTT-EE--HHH.HTT........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 
                          f+k+lt sdv+k++rlv+pkk+a ++        +g+  e+++++++d++ r+W+++++y+ +s+++v+t+GW +Fv+++ Lke+D++++
  GSBRNA2T00063329001 180 FQKELTASDVGKLNRLVIPKKYAVKYlpfisereEGEIVEDVEVVFYDREMRRWTFTYCYWTSSKSFVFTRGWIGFVREKSLKEKDVITL 269
                          99****************************99985566799************************************************9 PP

                          E CS
                   B3  83 k 83 
                          +
  GSBRNA2T00063329001 270 Y 270
                          9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003807.4E-1657120IPR001471AP2/ERF domain
CDDcd000189.57E-2157116No hitNo description
PROSITE profilePS5103217.09557114IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-1457114IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-1357115IPR016177DNA-binding domain
PfamPF008474.0E-657103IPR001471AP2/ERF domain
PRINTSPR003679.6E-55869IPR001471AP2/ERF domain
PRINTSPR003679.6E-57894IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.105.8E-29172271IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.7E-25177272IPR015300DNA-binding pseudobarrel domain
CDDcd100173.99E-24179270No hitNo description
PfamPF023623.1E-22180271IPR003340B3 DNA binding domain
PROSITE profilePS5086311.307180293IPR003340B3 DNA binding domain
SMARTSM010192.6E-16180283IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MFLLSSVIPM DIAKSKASNT SDSYLPPKKR MRLSEPPTET TLVSAAIKKG SFSDNIKYKG  60
VVQQPNSRWG AQIYVDHKRI WLGTFSSAAE AAMAFDSASI KLRSFDTISE RNFPWSDLTV  120
QEPVFQNGYT TEAVLNMIKD GSYQREFIDF LKNRSQVVVG LKQNRRDEEP SKCFSSRQLF  180
QKELTASDVG KLNRLVIPKK YAVKYLPFIS EREEGEIVED VEVVFYDREM RRWTFTYCYW  240
TSSKSFVFTR GWIGFVREKS LKEKDVITLY TCDVPTLEGQ SKKFSMIDIH RFSDNDSVAT  300
DEEVNKTVHD ISDDVMKPEK FFNSKFGEEE NRGGFMLFGV RIQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A1e-2017926913100DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00063329001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893010.0AC189301.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB030D08, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013591163.10.0PREDICTED: AP2/ERF and B3 domain-containing transcription factor At1g51120-like
SwissprotQ9C6P51e-145RAVL2_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g50680
TrEMBLA0A078HJT30.0A0A078HJT3_BRANA; BnaC06g03910D protein
STRINGBo6g022460.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17052788
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50680.11e-129RAV family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]