PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00063212001

Common Name

GSBRNA2T00063212001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Dof

Protein Properties

Length: 391aa MW: 42457.1 Da PI: 6.5072

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00063212001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	126.2	1e-39	126	185	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++k+l+cprCds++tkfCyynny+++qPr+fCk C+ryWt+GG++rnvPvG+grrknk+ GSBRNA2T00063212001 126 PDKILPCPRCDSMETKFCYYNNYNVNQPRHFCKRCQRYWTAGGTMRNVPVGAGRRKNKSL 185 7899*****************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	3.0E-31	122	183	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.6E-32	128	184	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.612	130	184	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	132	168	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 391 aa Download sequence Send to blast
MSDPAIKLFG KTIPLPELVG VDSSSSYTEH QHQNPVQLSD SCTRDDEEMG DSGLAGEDGG 60 DDAGFHGGGS ESEKEEKDNQ LRDESSNVTM ASSITEKTKT TKATKTDEES SQNNETCSRE 120 GKLKKPDKIL PCPRCDSMET KFCYYNNYNV NQPRHFCKRC QRYWTAGGTM RNVPVGAGRR 180 KNKSLASHYN RHVGITSAED TQKAAARTDP NLLTFGTDSV LCESMASGLN LAEKSMLNTQ 240 TGQQEPNESV AISPLPKVPC FAGPPPPPAW PYPWNGVSWT VLPFYPPPAY WSCPGVSPGT 300 WNSSFTWMPQ PISPSGGSGP NSPTLEEAAK SSIWETLGIK KDEKADAFRG FRSSHKVKSC 360 LSDGKLPGRR PELLANPAAL SRSANFHESS *

Sequence ? help Back to Top

Protein Sequence Length: 391 aa Download sequence Send to blast

MSDPAIKLFG KTIPLPELVG VDSSSSYTEH QHQNPVQLSD SCTRDDEEMG DSGLAGEDGG  60
DDAGFHGGGS ESEKEEKDNQ LRDESSNVTM ASSITEKTKT TKATKTDEES SQNNETCSRE  120
GKLKKPDKIL PCPRCDSMET KFCYYNNYNV NQPRHFCKRC QRYWTAGGTM RNVPVGAGRR  180
KNKSLASHYN RHVGITSAED TQKAAARTDP NLLTFGTDSV LCESMASGLN LAEKSMLNTQ  240
TGQQEPNESV AISPLPKVPC FAGPPPPPAW PYPWNGVSWT VLPFYPPPAY WSCPGVSPGT  300
WNSSFTWMPQ PISPSGGSGP NSPTLEEAAK SSIWETLGIK KDEKADAFRG FRSSHKVKSC  360
LSDGKLPGRR PELLANPAAL SRSANFHESS *

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in the vasculature of cotyledons and hypocotyls, leaves and roots. {ECO:0000269\|PubMed:19619493}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity). Regulates a photoperiodic flowering response. Transcriptional repressor of 'CONSTANS' expression. The stability of CDF2 is controlled by 'GIGANTEA' and redundantly by ADO3, ADO2 and/or ADO1. {ECO:0000250, ECO:0000269\|PubMed:19619493}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00063212001

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian-regulation. Highly expressed at the beginning of the light period, then decreases, reaching a minimum between 16 and 29 hours after dawn before rising again at the end of the day. Regulated at the protein level by ADO3 and GI pos-transcriptionally. {ECO:0000269\|PubMed:19619493}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013647756.1	0.0	cyclic dof factor 2-like
Swissprot	Q93ZL5	0.0	CDF2_ARATH; Cyclic dof factor 2
TrEMBL	A0A078HF39	0.0	A0A078HF39_BRANA; BnaC06g12530D protein
STRING	Bo6g062110.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13795	18	25

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	1e-136	cycling DOF factor 2

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]