PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00063056001
Common NameGSBRNA2T00063056001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 786aa    MW: 88419.8 Da    PI: 6.8642
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00063056001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.20.00027369390122
                          EEETTTTEEESSHHHHHHHHHH CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirt 22 
                          ++C +C++ F++++++++Hi  
  GSBRNA2T00063056001 369 WVCCKCSEKFKDSESYMQHIVG 390
                          58*****************965 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.25.40.101.0E-749170IPR011990Tetratricopeptide-like helical domain
PfamPF047812.6E-2750158IPR006866Domain of unknown function DUF627, N-terminal
SuperFamilySSF484522.81E-750158IPR011990Tetratricopeptide-like helical domain
PfamPF047801.8E-53313458IPR006865Domain of unknown function DUF629
PROSITE patternPS000280371392IPR007087Zinc finger, C2H2
PROSITE profilePS5023516.685453784IPR028889Ubiquitin specific protease domain
SuperFamilySSF540013.34E-28469783No hitNo description
PfamPF004434.3E-17497781IPR001394Peptidase C19, ubiquitin carboxyl-terminal hydrolase
CDDcd022571.63E-17543782No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016579Biological Processprotein deubiquitination
GO:0005515Molecular Functionprotein binding
GO:0036459Molecular Functionthiol-dependent ubiquitinyl hydrolase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 786 aa     Download sequence    Send to blast
MGQKKKPPAP RSKQSLSSSA AEAEPSSEVS ACTSSEEPSN LAEIKAECEK ALTSFRRGSY  60
NKAIRLMKES CSRHQHSALI HRVQGTVCVK VSSVYEDAVT KQKYIRSAIE SARKAVELSP  120
NSIEFSHFYA NLLYESASDG REYEEVVQEC HRALAIENPI DPAKDSLQDE SQHKISTPEA  180
RIANVQDELR SLIQKSNLGS LSTWMKHLGN GEGEFRLFDM RKMAEDPIES NLVQTRRPNE  240
IKKATKTLEE KRKEIEVRVA AGRLLQQKSE SSSVDSVNSK GSDPALGSGQ RSGERRKHGN  300
ARKNGSTVER RDRVRSYWES TSKEMKKELL RIKVSDLKSH FSASKDGDAN DIITEALSFC  360
EANKTWRFWV CCKCSEKFKD SESYMQHIVG EHMGNVFPKM QMVLPQSLDS ERIEMLLTSP  420
WKPLDFPAAV KLLCSQQKIQ NSEFSEFYAG GYMDDGNLHS QKLFDFSGIM SLWNLGVFRA  480
EFLRSSTLDH HHVGDPCVVC SLYEVLTALS AASREIRKEP VTPSTLRIAL SNLYPDSSFF  540
QEAQMNDASE VLAVIFDCLH RSFAQSASVS DTDSSESNCT GSWDCANRTC IAHSLFGMNI  600
FEQLNCYSCG LESRHMKYTS FFHNINASAL RNMKVTCPET AFDELLNLVE MNHQLACDPE  660
TGGCGKPNHI RHFLNTPPHV FTAVLGWQNT CESVEDIAAT LAALNTEIDI SIMYRGLDPK  720
SIYSLASVVC YYGQHYHCFA YSHEHDRWIM YDDKTVKVIG SWSDILSMCK KGHLQPQLLL  780
YEKQR*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.80000.0flower| leaf| seed
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00063056001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0294830.0BT029483.1 Arabidopsis thaliana At3g47900 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022567823.10.0uncharacterized protein LOC106408582 isoform X1
RefseqXP_022567825.10.0uncharacterized protein LOC106408582 isoform X3
TrEMBLA0A078HGG40.0A0A078HGG4_BRANA; BnaA06g17020D protein
STRINGBra018101.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM294036
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]