PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00062099001

Common Name

GSBRNA2T00062099001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Trihelix

Protein Properties

Length: 300aa MW: 34059.1 Da PI: 4.8927

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00062099001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	38.9	2.3e-12	19	98	1	80
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcp 80 +Wt + l L++ +e++ +++ + ++W +s+++ + ++r+ +qC+ kw++l +y +ik++e++++ ++s ++ GSBRNA2T00062099001 19 EWTLKDCLILVNEIAAVESDCSNALSSFQKWTMISDNCNALDVHRTFNQCRRKWDSLVSDYSQIKKWESQERGSVHSYWS 98 5999*****************************************************************98766666665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	8.6E-10	19	99	No hit	No description
PROSITE profile	PS50090	6.319	20	76	IPR017877	Myb-like domain

Sequence ? help Back to Top
Protein Sequence Length: 300 aa Download sequence Send to blast
MEEGTSSGSR RTRSQVAPEW TLKDCLILVN EIAAVESDCS NALSSFQKWT MISDNCNALD 60 VHRTFNQCRR KWDSLVSDYS QIKKWESQER GSVHSYWSLS VEKRRKLNLP GNVDNELFQA 120 INAVVMIQEN KDGSEPDSDS DPDAQEDFDV VDVTAELGSK RSRQRTMVVM KENPPHKRKT 180 EEEPRRKNIQ EQRAKATHQK KKTMEVKKKP VVEISTDEEE EEAMSIEEEV KALEAKLGEK 240 TDIIHAIVGR NLAKGSETED GVGIEDKLKF VRQQGDELIA CLSEIANTLD RLREVPQEI*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	159	164	KRSRQR

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.25212	1e-142	bud\| flower

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00062099001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013625518.1	0.0	PREDICTED: uncharacterized protein LOC106331665 isoform X2
TrEMBL	A0A078HF67	0.0	A0A078HF67_BRANA; BnaC03g67720D protein
TrEMBL	A0A0D3BM13	0.0	A0A0D3BM13_BRAOL; Uncharacterized protein
STRING	Bo3g175040.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12154	23	28

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G31270.1	1e-110	sequence-specific DNA binding transcription factors

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]