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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00061892001 | ||||||||
Common Name | GSBRNA2T00061892001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | Trihelix | ||||||||
Protein Properties | Length: 343aa MW: 39356.4 Da PI: 8.9674 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 43 | 1.2e-13 | 179 | 223 | 24 | 68 |
trihelix 24 gklkkplWeevskkmrergferspkqCkekwenlnkrykkikege 68 + ++k +W+ s+++ erg+++sp+qC++k+++lnk+ kk+++++ GSBRNA2T00061892001 179 ALQRKSKWKFFSEVLFERGYHVSPQQCEDKFNDLNKQLKKLNDNR 223 4599*************************************9976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 1.5E-9 | 179 | 223 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 343 aa Download sequence Send to blast |
LVVFPNPNRE NLGKAFRDWD LWGPFFFKPA KSPSRSKPCF FRKFPLAGSV LRQGFCVSGN 60 PERLRSTADS FVQSLEGERD ENFPQEGMVC GGALSYGSFD LQGSMRVHHH NPNSRPLESL 120 PFTVVTAQTC NHNMPLTEQH KGERENNSVS YDHEPSFSEE GGDGDDLSMD GGSRRKFAAL 180 QRKSKWKFFS EVLFERGYHV SPQQCEDKFN DLNKQLKKLN DNRLNLHHDL ALQHSVKLAF 240 RNIDDQENDD FRNHQLERRT NRKNRQHSIS DLFIVLGLLA HQTRTLSHLW QSRIYFATIV 300 IRLTHLGVSP FFSSIMNVLI LSAFGFADVH MVEIFYKALK LK* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00061892001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A078FHU7 | 0.0 | A0A078FHU7_BRANA; BnaC07g13720D protein (Fragment) | ||||
STRING | Bo5g023990.1 | 1e-151 | (Brassica oleracea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G21200.1 | 7e-38 | sequence-specific DNA binding transcription factors |
Publications ? help Back to Top | |||
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