PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00061321001
Common NameGSBRNA2T00061321001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 447aa    MW: 49012.3 Da    PI: 10.0803
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00061321001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.64.6e-057292323
                         ETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                         C+ C++ F+r  nL+ H r+H
  GSBRNA2T00061321001 72 CEVCNRGFNREQNLQLHGRVH 92
                         *****************9998 PP
2zf-C2H213.20.00027121143123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          +kC +C+ks+  +s+ k+H + +
  GSBRNA2T00061321001 121 WKCDKCPKSYALQSDWKTHSKIC 143
                          58*****************9876 PP
3zf-C2H213.80.00017151169523
                          TTTEEESSHHHHHHHHHHT CS
              zf-C2H2   5 dCgksFsrksnLkrHirtH 23 
                          dCg++Fsr++n++ H  ++
  GSBRNA2T00061321001 151 DCGTTFSRRENYNAHKALC 169
                          9**************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.51E-869141No hitNo description
Gene3DG3DSA:3.30.160.606.3E-56992IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.1367092IPR007087Zinc finger, C2H2
SMARTSM003550.537092IPR015880Zinc finger, C2H2-like
PfamPF128740.00137292No hitNo description
PROSITE patternPS0002807292IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.605.0E-5107142IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035556121148IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 447 aa     Download sequence    Send to blast
MSSSYSQSIP LIATGANNFN QKEMEMTMTQ KCNTFVSPSL RKQRNQPGNR NPDAEVIALS  60
PKTIMATNRF LCEVCNRGFN REQNLQLHGR VHNLPWKPKQ KSEKEARRKK HYYRKHGEKQ  120
WKCDKCPKSY ALQSDWKTHS KICGIKVHRC DCGTTFSRRE NYNAHKALCD ALNQESGRNP  180
TGSITNMAAA AGGSDGRQDF YGGAASALGR LQDFYAYFYG GAASALGRHG FYRGAASALS  240
HNQFGNNSNT GYNLNRSSSN KFEGFVPHPT NPNPGPTNFP MQCPSNQASL VHNDQSLRSQ  300
HDLISLGARI NNNNNNTNHG YFQNNTKTSN QTLFAHGADI NDPSVWQRGL TPSSSSGVVV  360
NGFGDNDKGN LQGWMNSLAM TTNQQGWSAS NIFGPHFGNN LSMGGSDVLT LGVNGGSVSK  420
GRGDRNPAPL DTQMKFAYPN RPFGNP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-22117178364Zinc finger protein JACKDAW
5b3h_F2e-22117178364Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
196109KPKQKSEKEARRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00061321001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009114936.10.0PREDICTED: protein indeterminate-domain 6, chloroplastic-like
RefseqXP_009114937.10.0PREDICTED: protein indeterminate-domain 6, chloroplastic-like
RefseqXP_013740255.10.0protein indeterminate-domain 6, chloroplastic-like
SwissprotQ8RWX71e-155IDD6_ARATH; Protein indeterminate-domain 6, chloroplastic
TrEMBLA0A078FJJ00.0A0A078FJJ0_BRANA; BnaA09g24680D protein
STRINGBra023223.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36781759
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14580.21e-138C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  3. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]
  4. Bustillo-Avendaño E, et al.
    Regulation of Hormonal Control, Cell Reprogramming, and Patterning during De Novo Root Organogenesis.
    Plant Physiol., 2018. 176(2): p. 1709-1727
    [PMID:29233938]