PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00060795001
Common NameGSBRNA2T00060795001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family WRKY
Protein Properties Length: 575aa    MW: 62335.1 Da    PI: 6.3125
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00060795001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.22.6e-31184241260
                          --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                          +DgynWrKYGqK vkgse+prsYY+Ct ++C+ kkkvers+ +++++ei+Y+g Hnh+k
  GSBRNA2T00060795001 184 EDGYNWRKYGQKLVKGSEYPRSYYKCTNPNCQLKKKVERSR-EGHITEIIYKGAHNHSK 241
                          8****************************************.***************85 PP
2WRKY1016.9e-32382439259
                          --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          dDgy+WrKYGqK+vkg+++prsYY+Ct +gC+v+k+ver+++d k v++tYeg+H+he
  GSBRNA2T00060795001 382 DDGYHWRKYGQKVVKGNPNPRSYYKCTAPGCTVRKHVERASHDLKSVITTYEGKHDHE 439
                          8********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.3E-27181242IPR003657WRKY domain
SuperFamilySSF1182901.31E-24182242IPR003657WRKY domain
SMARTSM007746.7E-33183241IPR003657WRKY domain
PROSITE profilePS5081122.928184242IPR003657WRKY domain
PfamPF031061.3E-23184239IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.1E-35366441IPR003657WRKY domain
SuperFamilySSF1182907.06E-28373441IPR003657WRKY domain
PROSITE profilePS5081136.667376441IPR003657WRKY domain
SMARTSM007742.6E-34381440IPR003657WRKY domain
PfamPF031064.7E-24382438IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 575 aa     Download sequence    Send to blast
MSGFEEHVAV MGEWVPCNPS SKRVLKRELS LNHGQVTSNN NKDSSQTNNI SGGGLRERIA  60
ARAGFNTPRL NTENIRSNTD SSSLRSPCLT ISSPGLSPAT LLESPVFLSN PLAQPNGLLS  120
SPDASEKDKD EFFDVIGASF TFHPVSTSSS SFFQNATEMT LEEEGEGEEQ RGCDSMVGGG  180
APAEDGYNWR KYGQKLVKGS EYPRSYYKCT NPNCQLKKKV ERSREGHITE IIYKGAHNHS  240
KPPPNRRSGM QLDGTEQPEH QQQQQQQRDN AGTWVSCNNT QQQVGSNENN GEGGGQYESG  300
DGNGGVIMVD ASSTFSNDED EDDRGTHGSA SLGYDGGGGE GDESESKRRK LEAYAIEMSG  360
ATRAIREPRV VVQTTSDVDI FDDGYHWRKY GQKVVKGNPN PRSYYKCTAP GCTVRKHVER  420
ASHDLKSVIT TYEGKHDHEV PAARNSSHGG GGGNGNSGVS TAQTQHYQEP PRGRFERQLT  480
ANNQSQFGRP FSFQPHLGPP SGFAFGLGQT GLSNLSIPGL AFGQGKLPSL PYQYLSQPGG  540
MSEAMMQRGM EPKVEPGSET GQSVYDQMMS RLPG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-34184442878Probable WRKY transcription factor 4
2lex_A2e-34184442878Probable WRKY transcription factor 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.199730.0flower
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Low expression in senescent leaves (PubMed:11722756). Expressed in both the unfertilized egg cell and the pollen tube (PubMed:21316593). {ECO:0000269|PubMed:11722756, ECO:0000269|PubMed:21316593}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Regulates WOX8 and WOX9 expression and basal cell division patterns during early embryogenesis. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Required to repolarize the zygote from a transient symmetric state. {ECO:0000269|PubMed:21316593}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00060795001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM5931670.0KM593167.1 Brassica oleracea var. capitata WRKY transcription factor (WRKY141) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013682745.10.0probable WRKY transcription factor 2
RefseqXP_022554581.10.0probable WRKY transcription factor 2
SwissprotQ9FG770.0WRKY2_ARATH; Probable WRKY transcription factor 2
TrEMBLA0A078FG300.0A0A078FG30_BRANA; BnaC03g13730D protein
STRINGBo3g021100.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM79542740
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56270.10.0WRKY DNA-binding protein 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  4. Ueda M, et al.
    Transcriptional integration of paternal and maternal factors in the Arabidopsis zygote.
    Genes Dev., 2017. 31(6): p. 617-627
    [PMID:28404632]
  5. Lei R, et al.
    Arabidopsis WRKY2 and WRKY34 transcription factors interact with VQ20 protein to modulate pollen development and function.
    Plant J., 2017. 91(6): p. 962-976
    [PMID:28635025]