PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | GSBRNA2T00060582001 | ||||||||
Common Name | GSBRNA2T00060582001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
||||||||
Family | WRKY | ||||||||
Protein Properties | Length: 291aa MW: 32366.2 Da PI: 7.2878 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 90.8 | 1.1e-28 | 143 | 202 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dgy+WrKYGqK+ ++++ pr+Y++C+ a +C+vkkkv+rs ed++v++ tYegeHnh+ GSBRNA2T00060582001 143 VKDGYQWRKYGQKVTRDNPSPRAYFKCACApSCSVKKKVQRSVEDQSVLVATYEGEHNHP 202 58**************************999****************************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 26.773 | 138 | 204 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 1.7E-27 | 138 | 204 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.28E-24 | 139 | 204 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.7E-31 | 143 | 203 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.6E-23 | 144 | 202 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 291 aa Download sequence Send to blast |
MDQYPSSLVD TSLDLTIGVT RMRVEEDSTT TALVDELNRM NAENKKLSEM LTLMCDKYNV 60 LREQLMEYVN NTERDQVSPP KKRKSPARDD ANSSAVVGGV SESSSTDQDD QYLGKKQREE 120 TVVKEKVSRV YYKTEASDTT LVVKDGYQWR KYGQKVTRDN PSPRAYFKCA CAPSCSVKKK 180 VQRSVEDQSV LVATYEGEHN HPMPSQIDSN SGLNRSPGAA NRSRSLAEPV TTIDLTETKK 240 VTSPSRVDFP EVQKLLVEQM ASSLTKDPNF TAALAAAVTG KLYQQNQTDK * |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 2e-20 | 142 | 205 | 16 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 2e-20 | 142 | 205 | 16 | 78 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250|UniProtKB:Q9SUP6}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | GSBRNA2T00060582001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | KF430054 | 0.0 | KF430054.1 Brassica rapa WRKY transcription factor 40 (WRKY40) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_013621652.1 | 0.0 | PREDICTED: probable WRKY transcription factor 40 | ||||
Swissprot | Q9SAH7 | 0.0 | WRK40_ARATH; Probable WRKY transcription factor 40 | ||||
TrEMBL | A0A078JPL1 | 0.0 | A0A078JPL1_BRANA; BnaAnng23990D protein | ||||
STRING | Bo2g095640.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2477 | 28 | 72 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G80840.1 | 1e-177 | WRKY DNA-binding protein 40 |