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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00060293001 | ||||||||
Common Name | GSBRNA2T00060293001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | Trihelix | ||||||||
Protein Properties | Length: 253aa MW: 28450 Da PI: 6.6891 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 43.5 | 8.1e-14 | 24 | 106 | 2 | 86 |
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 W+++ + +Liea ++ +l+rg+l++++W+ev++++ +g ++ +qCk++++ l+k+yk +k+ + s++ +f++l+ GSBRNA2T00060293001 24 WSEDATATLIEAWGDRYVNLSRGNLRQNDWREVADAVnsihGGGGRPKTDVQCKNRIDTLKKKYKTEKAKPSP------SSWCFFERLD 106 *************************************99888888999******************9998885......4699999986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 1.1E-25 | 22 | 107 | No hit | No description |
SMART | SM00595 | 0.0011 | 31 | 113 | IPR006578 | MADF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010468 | Biological Process | regulation of gene expression | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 253 aa Download sequence Send to blast |
METTPETQSK SHPHRLPPGR EDWWSEDATA TLIEAWGDRY VNLSRGNLRQ NDWREVADAV 60 NSIHGGGGRP KTDVQCKNRI DTLKKKYKTE KAKPSPSSWC FFERLDFLIG PVAAKKSTGV 120 VTPALKNHTL NQTGSKSSGS SLDDDDDDDD DDEVGDWGFV VRKHRRVEEV DPSGGEGSSC 180 RELARAILKL GEVYERMEGA KQRMMVELEK ERMEAAKELE LQRMNMLMDM QMELERSKLG 240 KRRAVAASGK KL* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bna.14521 | 0.0 | seed |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00060293001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009122379.1 | 1e-166 | PREDICTED: trihelix transcription factor ASIL1-like | ||||
TrEMBL | A0A078HEW5 | 0.0 | A0A078HEW5_BRANA; BnaA01g31020D protein | ||||
STRING | Bra034165.1-P | 1e-164 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4926 | 21 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G11100.1 | 1e-123 | sequence-specific DNA binding transcription factors |
Publications ? help Back to Top | |||
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