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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00060058001 | ||||||||
Common Name | GSBRNA2T00060058001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | B3 | ||||||||
Protein Properties | Length: 229aa MW: 26403.2 Da PI: 10.0061 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 71 | 1.6e-22 | 39 | 134 | 1 | 96 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE.....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy...rkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 ff +++++++lk+++++lpk+fa ++g+ k ++++l++e+g+sW++ l+y r++s+r+++ +GW++F+ an+ k D++ Fkl+++ GSBRNA2T00060058001 39 FFMTTVTASNLKRDIVYLPKTFAMSNGLLK--RFEIVLMNEEGESWKIGLTYescRGRSNRFYMNRGWRSFCVANKKKPEDMFKFKLVQN 126 788899********************9995..579*****************999999999**************************995 PP SEE..EEEE CS B3 88 sefelvvkv 96 e+++v+++ GSBRNA2T00060058001 127 -EETPVIHL 134 .55588876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 3.6E-21 | 34 | 132 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.34E-20 | 35 | 135 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 2.0E-25 | 39 | 138 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 3.04E-18 | 39 | 136 | No hit | No description |
PROSITE profile | PS50863 | 14.367 | 39 | 138 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.5E-20 | 39 | 135 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 229 aa Download sequence Send to blast |
MEDIAMKKRT KRNLCNTEKV SRKKKSPKAE TDPSTDQSFF MTTVTASNLK RDIVYLPKTF 60 AMSNGLLKRF EIVLMNEEGE SWKIGLTYES CRGRSNRFYM NRGWRSFCVA NKKKPEDMFK 120 FKLVQNEETP VIHLLPLNSE YLHKVEPSDE CDTRQGLEAT EKEFLGVETN RNDTSQSKEA 180 IKIRTRSKAT IKEENITTSQ NRFVTLTATP TAHSTQFPLW ARSMKPEI* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 6 | 24 | KKRTKRNLCNTEKVSRKKK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00060058001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002880610.1 | 6e-62 | B3 domain-containing protein REM10 isoform X3 | ||||
Refseq | XP_020885717.1 | 1e-61 | B3 domain-containing protein REM10 isoform X1 | ||||
Refseq | XP_020885718.1 | 1e-61 | B3 domain-containing protein REM10 isoform X2 | ||||
Swissprot | P0DH85 | 4e-56 | REM10_ARATH; B3 domain-containing protein REM10 | ||||
TrEMBL | A0A078HEH3 | 1e-169 | A0A078HEH3_BRANA; BnaC04g37070D protein | ||||
STRING | fgenesh1_pg.C_scaffold_4000392 | 2e-61 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM14490 | 15 | 22 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24700.1 | 2e-58 | B3 family protein |
Publications ? help Back to Top | |||
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