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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
GSBRNA2T00059945001 |
Common Name | GSBRNA2T00059945001 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family |
CO-like |
Protein Properties |
Length: 385aa MW: 42666.2 Da PI: 6.5168 |
Description |
CO-like family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
GSBRNA2T00059945001 | genome | Genoscope | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-B_box | 30.4 | 7.8e-10 | 13 | 56 | 3 | 40 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
+r+C+++ +k++++fC ++ +lC++C ++ H+ H++v
GSBRNA2T00059945001 13 ARTCDNCLKKQAHWFCAADEAFLCQSCDTSVHSAnllarrHERV 56
689*****************************667888888876 PP
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2 | CCT | 31.4 | 7e-12 | 316 | 339 | 1 | 24 |
CCT 1 ReaallRYkeKrktRkFeKkirYe 24
Rea+++RY+eK+ktR F K+irYe
GSBRNA2T00059945001 316 REASVSRYREKKKTRSFTKTIRYE 339
9**********************8 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 385 aa
Download sequence Send
to blast |
MKSLANCVRA KTARTCDNCL KKQAHWFCAA DEAFLCQSCD TSVHSANLLA RRHERVRLKD 60 STSPQQEAPT WYHGFTRKPR TPRGSGKRNN SSTFQDMVPE ISAEGQTDSS EVEGPLICQV 120 PVLGPTVVEP KIKFPTMRSG VMIDGHEDED KDESCLNGIF PTNMEVEDFA ADVETLLGHG 180 LDKESYTLEE LGLSNTEMFK KDEIEDKETK AMNMDIEIGD DDQGNRDGTL PGECVQAKEE 240 KKKNVLMLSL DYDQVISTWG GQGLPWTSGG PPELDINISG SPVVSKVSKR DNGRKSRKKR 300 RVGGCLPSSV VGDGGREASV SRYREKKKTR SFTKTIRYET VVPYDKETEE EVIAVLKIAM 360 ACLSISPEKS LSTKRNIKII CYSK*
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Best hit in Arabidopsis thaliana ? help
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Hit ID |
E-value |
Description |
AT1G25440.1 | 1e-145 | B-box type zinc finger protein with CCT domain |