PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00059491001 | ||||||||
Common Name | GSBRNA2T00059491001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | FAR1 | ||||||||
Protein Properties | Length: 213aa MW: 24169.5 Da PI: 9.2304 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 91.2 | 1.4e-28 | 43 | 130 | 2 | 90 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 Y++YA+++GF +r+++ +ks r+g++++r++vC+keg+r+++ ++ +++r++ra tr gCka ++vkk+k+gkw v+k+++eHnH+l GSBRNA2T00059491001 43 LYDSYATSTGFVMRVDAFRKSMRDGTVVWRRLVCNKEGFRRSRPRR-SESRKPRAITREGCKALIVVKKDKSGKWIVAKFVKEHNHPLL 130 7*******************************************99.9***************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.1E-26 | 43 | 130 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 213 aa Download sequence Send to blast |
MAVEGNLLRG EDVVENTITE EASSVVEPFI GMEFESEEAA KSLYDSYATS TGFVMRVDAF 60 RKSMRDGTVV WRRLVCNKEG FRRSRPRRSE SRKPRAITRE GCKALIVVKK DKSGKWIVAK 120 FVKEHNHPLL SSLTNGRQSS QISQPPDEKD VKIKELSTEL SRERKRCATL QQQLDMVLEV 180 MEEHSNHLSV NINNVIQSVR EIESNTFTKP LS* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269|PubMed:15591448}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription activator involved in regulating light control of development. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00059491001 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013750576.1 | 1e-153 | protein FAR1-RELATED SEQUENCE 5-like | ||||
Swissprot | Q9SZL8 | 2e-28 | FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5 | ||||
TrEMBL | A0A078HDP3 | 1e-154 | A0A078HDP3_BRANA; BnaA05g30130D protein | ||||
STRING | Bo5g141470.1 | 1e-118 | (Brassica oleracea) | ||||
STRING | Bostr.22252s0282.1.p | 1e-118 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM13524 | 22 | 27 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G07500.1 | 1e-106 | FAR1 family protein |
Publications ? help Back to Top | |||
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