PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00059103001
Common NameGSBRNA2T00059103001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family WRKY
Protein Properties Length: 306aa    MW: 34175 Da    PI: 7.8655
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00059103001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY231.6e-07110127320
                          -SS-EEEEEEE--TT-SS CS
                 WRKY   3 DgynWrKYGqKevkgsef 20 
                          Dg+ WrKYGqK++k+s++
  GSBRNA2T00059103001 110 DGFLWRKYGQKTIKQSKH 127
                          9**************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508119.374103227IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.0E-10105128IPR003657WRKY domain
SuperFamilySSF1182901.14E-5107128IPR003657WRKY domain
SMARTSM007741.2E-7108226IPR003657WRKY domain
PfamPF031062.7E-5110129IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.0E-10187225IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MNTSHEKAVQ AILYGHSCAK RLKLQLDHPV ADGRSVSNYD LAKSIVHCFS DAISIFSDKP  60
KSKDDVFSDL SSRNYPPPLH QRSHSKKRKN NSTNSSENWR HDSPDPNYYD GFLWRKYGQK  120
TIKQSKHQSG STRGRVALLV HARDRFFSIA KLLAPHVATQ IWAHAYGLFE YPGEDLSVGC  180
TSHPGIRSVS LIDPDYACGA RKHEPTIKDN PPVYRTTYFG HHTCNINQNA GFTTIGDPVD  240
NLENARIIRF GQDLDQETSC LSVSVKHEEG IIIEETMDHC RGITGNDKDC QTVINENHQS  300
SPSGS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18088QRSHSKKRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.158029e-69seed
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00059103001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009126547.11e-145PREDICTED: probable WRKY transcription factor 38
SwissprotQ8GWF12e-50WRK38_ARATH; Probable WRKY transcription factor 38
TrEMBLA0A078HE190.0A0A078HE19_BRANA; BnaC02g09600D protein
STRINGBo2g024010.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM136731727
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22570.15e-46WRKY DNA-binding protein 38
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Singh V,Roy S,Singh D,Nandi AK
    Arabidopsis flowering locus D influences systemic-acquired-resistance- induced expression and histone modifications of WRKY genes.
    J. Biosci., 2014. 39(1): p. 119-26
    [PMID:24499796]
  3. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  4. Janda M, et al.
    Phospholipase D affects translocation of NPR1 to the nucleus in Arabidopsis thaliana.
    Front Plant Sci, 2015. 6: p. 59
    [PMID:25741350]