PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00058681001 | ||||||||
Common Name | GSBRNA2T00058681001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | ERF | ||||||||
Protein Properties | Length: 293aa MW: 32678.1 Da PI: 4.5146 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.4 | 1.7e-18 | 74 | 124 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 + ++GVr++ +g+WvAeIr+p + r r +lg+f taeeAa a+++a+k ++g GSBRNA2T00058681001 74 CSFRGVRQRV-WGKWVAEIREP---N-RvSRLWLGTFPTAEEAASAYDEAAKVMYG 124 579*****99.**********8...2.58***********************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 9.18E-31 | 74 | 134 | No hit | No description |
Pfam | PF00847 | 1.2E-12 | 74 | 124 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 6.2E-35 | 75 | 138 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.628 | 75 | 132 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.2E-30 | 75 | 133 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.77E-20 | 76 | 133 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 5.4E-10 | 76 | 87 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.4E-10 | 98 | 114 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 293 aa Download sequence Send to blast |
MAVYEQTVTD TSSSKKRKSR ARADGTTVAD RLKKWKEYND IVNKGENKPR QKVPAKGSKK 60 GCMKGKGGPE NTHCSFRGVR QRVWGKWVAE IREPNRVSRL WLGTFPTAEE AASAYDEAAK 120 VMYGSLARLN FPQQCVVGSE SFASTSSQSE VCSVEDKPVL VGDVHCESRP VSQISDNNTR 180 MSSDLLDEFD EEYWGRVSKE IEKPKEGEEE VLTVADYGWS NDMLSEQDLW DPNEVFDVDE 240 LLGDIDECIM LKGTGPDEDQ NGINPGGYDS HVPLQLEPHD GHEFFDLSSQ DL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-17 | 73 | 139 | 12 | 79 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed preferentially in roots and stems, and at a lower level in leaves. {ECO:0000269|PubMed:10809011}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription. {ECO:0000269|PubMed:11798174}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00058681001 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By high-salt and drought stresses. {ECO:0000269|PubMed:10809011, ECO:0000269|PubMed:9707537}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013675196.1 | 0.0 | dehydration-responsive element-binding protein 2B-like | ||||
Swissprot | O82133 | 1e-106 | DRE2B_ARATH; Dehydration-responsive element-binding protein 2B | ||||
TrEMBL | A0A078JJU1 | 0.0 | A0A078JJU1_BRANA; BnaAnng23490D protein | ||||
STRING | Bra034159.1-P | 0.0 | (Brassica rapa) | ||||
STRING | Bo1g141310.1 | 1e-180 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2874 | 17 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G11020.1 | 8e-83 | DRE/CRT-binding protein 2B |