PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00058135001 | ||||||||
Common Name | GSBRNA2T00058135001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | bHLH | ||||||||
Protein Properties | Length: 260aa MW: 29814.8 Da PI: 9.9881 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 54.3 | 2.4e-17 | 67 | 114 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++hn+ ErrRR++iN+++ L+el+P + K +Ka++Le A+eY+ksLq GSBRNA2T00058135001 67 EMHNISERRRREKINEKLKALQELIPRC-----NKTDKASMLEDAIEYVKSLQ 114 58*************************8.....6******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 9.29E-21 | 62 | 123 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 18.52 | 64 | 113 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 8.0E-15 | 67 | 114 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.04E-17 | 67 | 118 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 2.0E-21 | 68 | 122 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.4E-18 | 70 | 119 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 260 aa Download sequence Send to blast |
MSPCGPIKRE TKNPTWKVMR SCKYRKLCSM HRDTRFLGAE KIGSLLFETG EEEARGSTSR 60 KRSRAAEMHN ISERRRREKI NEKLKALQEL IPRCNKTDKA SMLEDAIEYV KSLQLQIQMM 120 SMGGGGMMPM MYNPNMQCFM APSAMGMNRP PFIPFPGTAF PRPPAHMAGL GPPYPAPPRY 180 PFPNVHQPDP NQPQFPSYLN PYSQFVGLQQ MQQPPPPLQV YFFFFYIIHC ALYSYVPYNG 240 RCSQDGVLKC FNRIKQHHI* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 59 | 76 | RKRSRAAEMHNISERRRR |
2 | 72 | 77 | ERRRRE |
3 | 73 | 78 | RRRREK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00058135001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009129259.1 | 6e-91 | PREDICTED: putative transcription factor bHLH056 | ||||
Swissprot | Q9SVU7 | 2e-63 | BH056_ARATH; Putative transcription factor bHLH056 | ||||
TrEMBL | A0A078HCM2 | 0.0 | A0A078HCM2_BRANA; BnaA01g08070D protein | ||||
STRING | Bo1g017090.1 | 2e-85 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM9041 | 16 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G28800.1 | 1e-51 | bHLH family protein |
Publications ? help Back to Top | |||
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