PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00058131001
Common NameGSBRNA2T00058131001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 372aa    MW: 41332.2 Da    PI: 6.8629
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00058131001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH51.22.2e-16310357355
                          HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          ++h++ ErrRR++iN+++  L+el+P +      K +Ka++Le A+eY+ksLq
  GSBRNA2T00058131001 310 EMHSISERRRREKINEKLKALQELIPRC-----NKTDKASMLEDAIEYVKSLQ 357
                          58*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.19E-18305363IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.26307356IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.16E-15310361No hitNo description
PfamPF000107.4E-14311357IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.6E-19311361IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.3E-17313362IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MKETKEKRQK GLRVEGRRHC ECRKRHSTHR DTHFRGREER EREGILFVNQ GEDDIVELLW  60
KSGQVVESSQ AQRPPVPPPI LRGSGSGGGE GNAQLPQPPP LQQRSDDQNL FIGEDEMASW  120
LLHHPLREED DFHSHLFYSG VVSAVPSTQP QASVSLTPPQ PPTAAERPIG QVMAERRAES  180
FFNFWRLRGN IHTGGRVEAA AAPWVPVVKD SKQVGSSATP SSSAATATSG VLQAFAVPRL  240
GQSGVDTVCE IAGPSSSVVS KTETELFRIE TEAGDDERKR KEREEPADDT EETGEEARGS  300
TSRKRSRAAE MHSISERRRR EKINEKLKAL QELIPRCNKT DKASMLEDAI EYVKSLQLQI  360
QAFVFLFLSV V*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1302319RKRSRAAEMHSISERRRR
2315320ERRRRE
3316321RRRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00058131001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013670972.11e-166transcription factor bHLH119-like isoform X2
SwissprotQ9SVU78e-88BH056_ARATH; Putative transcription factor bHLH056
TrEMBLA0A078H9U40.0A0A078H9U4_BRANA; BnaA01g08110D protein
STRINGBra011061.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM90411635
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28790.25e-72bHLH family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]