PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00057987001
Common NameGSBRNA2T00057987001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 81aa    MW: 9233.25 Da    PI: 4.1051
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00057987001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B331.14.2e-102455398
                         EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                   B3 53 rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
                         +k++++++lt GW++Fvk+n+L++g ++ F +d +++f  +v +f 
  GSBRNA2T00057987001  2 KKRGETVFLTVGWENFVKDNELEDGKMMEFIYDCDRTF--YVVIFG 45
                         577788*************************9987777..888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086310.856147IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.7E-9246IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.16E-10247IPR015300DNA-binding pseudobarrel domain
PfamPF023621.6E-7245IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 81 aa     Download sequence    Send to blast
MKKRGETVFL TVGWENFVKD NELEDGKMME FIYDCDRTFY VVIFGHGGVS ELRVFPQAVV  60
DVGDYATGEE EEEEEKNKSN *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1yel_A2e-2214656101At1g16640
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00057987001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009149100.12e-52PREDICTED: B3 domain-containing protein At1g16640
RefseqXP_013646622.12e-52B3 domain-containing protein At1g16640-like
SwissprotQ9FX772e-27Y1664_ARATH; B3 domain-containing protein At1g16640
TrEMBLA0A397YYT15e-51A0A397YYT1_BRACM; Uncharacterized protein
TrEMBLA0A3P5YQI85e-51A0A3P5YQI8_BRACM; Uncharacterized protein
STRINGBra026034.1-P9e-52(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM157511416
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16640.18e-30B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]