PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00057511001
Common NameGSBRNA2T00057511001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GATA
Protein Properties Length: 141aa    MW: 15168.5 Da    PI: 10.2774
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00057511001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA56.24.7e-184579135
                 GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                         C+ Cgt+kTplWR gp g+k+LCnaCG++++kk++
  GSBRNA2T00057511001 45 CAICGTSKTPLWRGGPTGPKSLCNACGIRNKKKKS 79
                         999*****************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011412.7963975IPR000679Zinc finger, GATA-type
SMARTSM004013.8E-153991IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.103.2E-164092IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577161.19E-134191No hitNo description
CDDcd002027.98E-134480No hitNo description
PfamPF003204.3E-164578IPR000679Zinc finger, GATA-type
PROSITE patternPS0034404570IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 141 aa     Download sequence    Send to blast
MLDHTEKIFD SEAMTTKFTS VDATEDISSS SDGGGGGVNS EKKSCAICGT SKTPLWRGGP  60
TGPKSLCNAC GIRNKKKKST VRSEVKKKKK KQSSKIGDSL KQRLMELGRE VMMQRKKKLG  120
EEEQAAVLLM ALSYASSVYA *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17590KKKSTVRSEVKKKKKK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.233810.0vegetative meristem
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00335DAPTransfer from AT3G06740Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00057511001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009124673.18e-86PREDICTED: GATA transcription factor 15
SwissprotQ8LG107e-64GAT15_ARATH; GATA transcription factor 15
TrEMBLA0A078HDM88e-97A0A078HDM8_BRANA; BnaA01g32640D protein
STRINGBra040288.1-P3e-85(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50502652
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06740.14e-56GATA transcription factor 15
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Behringer C,Bastakis E,Ranftl QL,Mayer KF,Schwechheimer C
    Functional diversification within the family of B-GATA transcription factors through the leucine-leucine-methionine domain.
    Plant Physiol., 2014. 166(1): p. 293-305
    [PMID:25077795]
  3. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  4. Ranftl QL,Bastakis E,Klermund C,Schwechheimer C
    LLM-Domain Containing B-GATA Factors Control Different Aspects of Cytokinin-Regulated Development in Arabidopsis thaliana.
    Plant Physiol., 2016. 170(4): p. 2295-311
    [PMID:26829982]