PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00057325001 | ||||||||
Common Name | GSBRNA2T00057325001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | bHLH | ||||||||
Protein Properties | Length: 339aa MW: 35611.9 Da PI: 6.962 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 34.4 | 3.9e-11 | 158 | 203 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 h+++Er RR+ri +++ L+el+P+ + K +Ka++L + ++Y+k Lq GSBRNA2T00057325001 158 HSIAERLRRERIAERMKGLQELVPNgN------KTDKASMLDEIIDYVKFLQ 203 99***********************55......******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.31E-16 | 151 | 212 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 8.55E-13 | 151 | 207 | No hit | No description |
PROSITE profile | PS50888 | 16.984 | 153 | 202 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.3E-15 | 155 | 212 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.7E-8 | 158 | 203 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.8E-13 | 159 | 208 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 339 aa Download sequence Send to blast |
MNSSLLTPSS SSHVQTPATT FDHEDFLDQI FASSPWPSDE AHPPPPPPPP PSSDGFVDSR 60 HQQIMMMPLP SHHRNEVVDG SSVHSLYNGF SACGSLPFHI PQGSAGGMMN QQGQALTQTQ 120 AQKQPQVSAS IATGGTAAAP PQSRTKVRAR RGQATDPHSI AERLRRERIA ERMKGLQELV 180 PNGNKTDKAS MLDEIIDYVK FLQLQVKVLS MSRLGGGASI PSQISEENAS SAVAGGNQAT 240 GNSNDSLTMT EHQVAKLMEE DMGSAMQYLQ GKGLCLMPIS LATAISTATC HSRAAGNVGG 300 HPSSPNLSGM TVQSTNKVKL SGNGVTEGSS PLAVKEAV* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 162 | 167 | RLRRER |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bna.13128 | 0.0 | leaf| microspore| microspore-derived embryo| seed |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00659 | PBM | Transfer from Pp3c14_15890 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00057325001 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By cold, UV, ethylene (ACC), flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269|PubMed:12679534}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK176370 | 1e-127 | AK176370.1 Arabidopsis thaliana mRNA for putative bHLH transcription factor (bHLH066), complete cds, clone: RAFL24-07-J21. | |||
GenBank | BT026512 | 1e-127 | BT026512.1 Arabidopsis thaliana At2g24260 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009117141.1 | 0.0 | PREDICTED: transcription factor bHLH66-like | ||||
Swissprot | Q9ZUG9 | 1e-163 | BH066_ARATH; Transcription factor bHLH66 | ||||
TrEMBL | A0A078H8E8 | 0.0 | A0A078H8E8_BRANA; BnaA09g41470D protein | ||||
STRING | Bra007863.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3042 | 27 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24260.1 | 1e-139 | LJRHL1-like 1 |
Publications ? help Back to Top | |||
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