PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00057300001
Common NameGSBRNA2T00057300001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 1043aa    MW: 117744 Da    PI: 9.4927
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00057300001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B331.23.9e-101197195
                         EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                   B3  1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90
                         ff +l+p   + ++ l++p +f++++ +g +  + t  l++ +s r+W+vk+       + +l++GW+eF+ a+ L++g  ++ +++g + f
  GSBRNA2T00057300001 11 FFHTLVPGCGFHTH-LIIPLDFFSKYiEGRSV-DNTAHLKSgSSDRTWQVKM------AGPILSDGWREFAVAHSLQAGHLILVRYEGYMVF 94
                         66677776677777.***********855544.458999996777*******......4568***********************9987887 PP

                         ..EEE CS
                   B3 91 elvvk 95
                           +v+
  GSBRNA2T00057300001 95 --HVT 97
                         ..665 PP
2B366.34.4e-211542381197
                          HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
                   B3  11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                          l  + l+lp +f++++g+  +es +++l d +grsW++ l+++ +s+++++t+GW++F+++ng ++g f++Fkl+g+ +++lv++++
  GSBRNA2T00057300001 154 LLIDTLYLPQHFTSTNGLT-RESHKIVLIDGEGRSWTLDLRFNASSDTFYMTRGWRSFCEENGQEAGGFFTFKLVGN-GETLVLSFR 238
                          455789**********988.5677***************************************************95.444555554 PP
3B356.64.6e-18294384197
                          EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                          f++ ++p+d+++  rl+lpk+f++e+g++k++  ++ l d++g +W   l  r k+g + l+kGWkeFvk+ngL +g +  +kl++ +++
  GSBRNA2T00057300001 294 FLTFTLPPDYFRIERLSLPKQFLRENGINKPG--EICLLDKDGMKWPTSL-LRDKKGIMSLGKGWKEFVKSNGLASGFT--LKLIW-EDT 377
                          677889*********************99766..8***************.455555689****************955..55557.566 PP

                          ..EEEEE CS
                   B3  91 elvvkvf 97 
                          ++ ++++
  GSBRNA2T00057300001 378 TPAFSLC 384
                          6666655 PP
4B354.12.8e-17432523499
                          E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
                   B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                          + +++d l+ +r++lpk+f+ e +++k++   + l  ++  +W+ kl ++ ++gr+ l++GW  F++ang k+g++v+++ ++ ++++++
  GSBRNA2T00057300001 432 IKIRPDLLTCNRMRLPKQFVMESNMNKPG--VIYLLGKDDTKWTTKL-VKERDGRMKLGSGWTVFAEANGFKTGESVTLESIW-EDGTPM 517
                          6678999************9888878655..7***************.67788889************************999.9999** PP

                          EEEE-S CS
                   B3  94 vkvfrk 99 
                          ++++r+
  GSBRNA2T00057300001 518 IRFLRT 523
                          *99986 PP
5B335.32e-11561648597
                          -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
                   B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                          l+p+dv +   l++p + +e++g +k +  ++t+  e+  + + +l    ++g++ l++GW eF++ang+k g++++++++++ +++ +v
  GSBRNA2T00057300001 561 LLPEDVKAG-VLIIPSQLLEANGVNKLG--KITILGENKMELSGYL--LSRGGTVALENGWGEFCEANGVKLGESFTLEFIKKPDKTTHV 645
                          566666665.5***********988765..6888887777777777..899999***************************998888888 PP

                          EEE CS
                   B3  95 kvf 97 
                           + 
  GSBRNA2T00057300001 646 EAS 648
                          765 PP
6B336.39.6e-126617351798
                          E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                   B3  17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                          +l  + +++ ++++ ++ +l+   ++  +W+vk+  + ++    lt+GWkeF+ a++L++gD+v+F+ ++++ f  +v++f 
  GSBRNA2T00057300001 661 SLLLQACRRKKNEHMTTAKLRSDVSDDITWKVKI--EDGR---KLTDGWKEFALAHDLRVGDIVIFRQEKDMAF--HVTMFG 735
                          556677777766655555555555888*******..4444...39**********************7776777..888775 PP
7B3764.3e-24786871593
                          -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
                   B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                           +++++l+ +rl+lpk+f++e+g++++++ +++l++e+grsW+++l+ + + g++++t+GWk+F++a gL++g  ++Fkl++r ++  +
  GSBRNA2T00057300001 786 NVRPSSLRDNRLTLPKRFVRENGLETRCG-EIVLMNEKGRSWTLNLSRKDSCGTMYITGGWKSFCNASGLRAGSLFTFKLIKRGDT--L 871
                          56789999****************99887.****************87888888***************************98655..3 PP
8B355.11.4e-179401035298
                           EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
                   B3    2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88  
                           ++ +++ +  k++rl +p +f++ hg++ke+  ++++ d++g +W+  l+  +++++r+ l +GWkeF kan ++ g++++ kl+++ 
  GSBRNA2T00057300001  940 LTLTLKISDVKNSRLFIPVNFTRLHGINKET--KMVMLDKNGVKWSTSLRSeTRGGDRIRLVGGWKEFFKANCVEIGESIIVKLIWEG 1025
                           55566777788889************99655..8***************887888888****************************98 PP

                           EE..EEEEE- CS
                   B3   89 efelvvkvfr 98  
                           ++++v+ +++
  GSBRNA2T00057300001 1026 DKSCVLEFYS 1035
                           8888877765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019369.61E-12897IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.9E-13897IPR015300DNA-binding pseudobarrel domain
CDDcd100172.17E-119100No hitNo description
PROSITE profilePS508639.95310102IPR003340B3 DNA binding domain
SMARTSM010194.1E-1611102IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.8E-22137240IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.42E-22138240IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086316.243144240IPR003340B3 DNA binding domain
CDDcd100176.55E-19144239No hitNo description
SMARTSM010196.0E-28145241IPR003340B3 DNA binding domain
PfamPF023628.5E-19150238IPR003340B3 DNA binding domain
SuperFamilySSF1019364.71E-17292376IPR015300DNA-binding pseudobarrel domain
CDDcd100175.98E-16292385No hitNo description
Gene3DG3DSA:2.40.330.103.0E-17292376IPR015300DNA-binding pseudobarrel domain
SMARTSM010193.8E-25294387IPR003340B3 DNA binding domain
PROSITE profilePS5086313.507294387IPR003340B3 DNA binding domain
PfamPF023622.8E-17294384IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.8E-18419528IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.49E-18425525IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.0E-22429524IPR003340B3 DNA binding domain
PROSITE profilePS5086313.07429524IPR003340B3 DNA binding domain
PfamPF023621.5E-15430522IPR003340B3 DNA binding domain
CDDcd100174.01E-16437522No hitNo description
Gene3DG3DSA:2.40.330.105.4E-13549645IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-13554639IPR015300DNA-binding pseudobarrel domain
CDDcd100171.41E-7555639No hitNo description
SMARTSM010195.4E-14556651IPR003340B3 DNA binding domain
PROSITE profilePS5086310.08556651IPR003340B3 DNA binding domain
PfamPF023621.4E-9559646IPR003340B3 DNA binding domain
SMARTSM010192.4E-6652737IPR003340B3 DNA binding domain
PfamPF023621.3E-7661732IPR003340B3 DNA binding domain
PROSITE profilePS5086311.011680737IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.9E-19684748IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.75E-13686744IPR015300DNA-binding pseudobarrel domain
CDDcd100171.24E-8686734No hitNo description
Gene3DG3DSA:2.40.330.101.6E-23775874IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.34E-21780874IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.9E-30782878IPR003340B3 DNA binding domain
CDDcd100175.85E-22782874No hitNo description
PROSITE profilePS5086315.989782878IPR003340B3 DNA binding domain
PfamPF023623.6E-22786870IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.5E-179321027IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.28E-199351029IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.6069391037IPR003340B3 DNA binding domain
CDDcd100171.20E-159391033No hitNo description
SMARTSM010198.5E-219391037IPR003340B3 DNA binding domain
PfamPF023623.4E-169391036IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1043 aa     Download sequence    Send to blast
MAKSTLLHPQ FFHTLVPGCG FHTHLIIPLD FFSKYIEGRS VDNTAHLKSG SSDRTWQVKM  60
AGPILSDGWR EFAVAHSLQA GHLILVRYEG YMVFHVTDCR EIPSNNNKHS HPRTDVDDLP  120
KKKKRAKTNS NETEADSSSL DNSCFVATVT AFNLLIDTLY LPQHFTSTNG LTRESHKIVL  180
IDGEGRSWTL DLRFNASSDT FYMTRGWRSF CEENGQEAGG FFTFKLVGNG ETLVLSFRPT  240
ESISSTMQRD SSQEEDTEWE SDEDEPLMET EKKKSNTKRR AVPYSSYSPC HKRFLTFTLP  300
PDYFRIERLS LPKQFLRENG INKPGEICLL DKDGMKWPTS LLRDKKGIMS LGKGWKEFVK  360
SNGLASGFTL KLIWEDTTPA FSLCCPESTS DKEQQEYFKH IKKQSLYIDP SNNGDNSSKD  420
SSPSSHNPLV TIKIRPDLLT CNRMRLPKQF VMESNMNKPG VIYLLGKDDT KWTTKLVKER  480
DGRMKLGSGW TVFAEANGFK TGESVTLESI WEDGTPMIRF LRTGSNSSET KKNESVSTEV  540
TEPKTSGSSS EIHDRFVTLT LLPEDVKAGV LIIPSQLLEA NGVNKLGKIT ILGENKMELS  600
GYLLSRGGTV ALENGWGEFC EANGVKLGES FTLEFIKKPD KTTHVEASSS RLPQPLDHSC  660
SLLLQACRRK KNEHMTTAKL RSDVSDDITW KVKIEDGRKL TDGWKEFALA HDLRVGDIVI  720
FRQEKDMAFH VTMFGPSCCE IQYGSRLNKN KLNLSKIQNK KKVKKKKNKK RYMKSSSLDP  780
SCFVNNVRPS SLRDNRLTLP KRFVRENGLE TRCGEIVLMN EKGRSWTLNL SRKDSCGTMY  840
ITGGWKSFCN ASGLRAGSLF TFKLIKRGDT LVLLKSPSST KSAEEDCLEA YGIELDSEEA  900
SNQDEKPRLL WKASTSSPSQ KKPRSLWKAS TSSPSQNLFL TLTLKISDVK NSRLFIPVNF  960
TRLHGINKET KMVMLDKNGV KWSTSLRSET RGGDRIRLVG GWKEFFKANC VEIGESIIVK  1020
LIWEGDKSCV LEFYSKVKRE TK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00057300001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022547841.10.0B3 domain-containing protein REM13-like
TrEMBLA0A078H8C20.0A0A078H8C2_BRANA; BnaA09g41270D protein
STRINGBra007836.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM137801326
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24650.11e-172DNA binding;DNA binding;sequence-specific DNA binding transcription factors
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]