PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00057298001
Common NameGSBRNA2T00057298001, LOC106368597
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 514aa    MW: 58938.6 Da    PI: 8.7437
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00057298001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B346.94.9e-1518951095
                         HHHTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
                   B3 10 vlksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95
                          ++++ l +p  f+ +h  k++++kt +l++ +s  +W+vkl  ++++    +++GW+ F+ a++L++gD+vvF+++g+  f  +v+
  GSBRNA2T00057298001 18 GFTKH-LDIPVAFFLKHLDKSNKGKTAKLRSdTSETTWNVKL--DGRR----FSDGWEYFAVAHDLRVGDIVVFRHEGELAF--HVT 95
                         55666.99*********667778999999997888*******..9998....9**********************8775544..655 PP
2B358.89.5e-19146237296
                          EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
                   B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                          f +++++++l+++ ++lpk fa  + +   ++++++l +e+ +sW+++l+ + + gr+++++GW++F+ ang k gD+++Fk+ + +e++
  GSBRNA2T00057298001 146 FVITVTPSNLRRDTVYLPKAFAVVNCLM--KKFEIVLVNEERESWKLNLRQDSYLGRFYMSNGWRSFCVANGKKPGDMFTFKMLQ-NETT 232
                          4677899***************999544..4579************************************************887.5666 PP

                          .EEEE CS
                   B3  92 lvvkv 96 
                          +v+k+
  GSBRNA2T00057298001 233 PVLKL 237
                          77765 PP
3B371.21.3e-22267357497
                          E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
                   B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                          + +++++ +++ ++lpk+fa+++g+k  +++++ l++e+g+sW++ l+++ +sgr+++++GW++F+ ang k gD++ Fkl++ + +++v
  GSBRNA2T00057298001 267 AIVTASNIRRDTMYLPKTFAASNGLK--SKFKIDLMNEKGESWTIDLRHEPYSGRFLIRSGWRSFCAANGKKPGDMFNFKLIR-NVETPV 353
                          56789999****************99..7789**************************************************9.566678 PP

                          EEEE CS
                   B3  94 vkvf 97 
                          +k+f
  GSBRNA2T00057298001 354 LKLF 357
                          8877 PP
4B351.91.4e-164275101297
                          HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
                   B3  12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                          +++ l lp +f++ +g+k++e  ++++ d+ g +W+  l + +kk+g++ l+kG k+F++ ng++ gD++v++l++ +++ +v+k++
  GSBRNA2T00057298001 427 TTSKLNLPLEFTKGNGIKNTE--KIKMIDRYGTTWSTSLLMnKKKRGEMKLGKGCKGFCEVNGVRMGDSFVLELVW-EDTVPVLKFC 510
                          455699*********988655..8***************994555555***************************9.7777888887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.2E-216113IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.71E-206106IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.0968100IPR003340B3 DNA binding domain
CDDcd100177.50E-16995No hitNo description
SMARTSM010193.1E-2011100IPR003340B3 DNA binding domain
PfamPF023621.9E-92289IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.3E-20139236IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.3E-20140236IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.831145241IPR003340B3 DNA binding domain
SMARTSM010191.3E-22145241IPR003340B3 DNA binding domain
CDDcd100172.98E-16145239No hitNo description
PfamPF023622.2E-17146237IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.1E-21262355IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.14E-20264356IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.804264360IPR003340B3 DNA binding domain
CDDcd100173.19E-18264358No hitNo description
SMARTSM010191.4E-29265360IPR003340B3 DNA binding domain
PfamPF023629.6E-21267357IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.9E-16415512IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.28E-17416512IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.08416512IPR003340B3 DNA binding domain
CDDcd100173.74E-12421510No hitNo description
SMARTSM010193.7E-20421513IPR003340B3 DNA binding domain
PfamPF023623.0E-14427510IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 514 aa     Download sequence    Send to blast
MALCSPTNPH FFQPLLPGFT KHLDIPVAFF LKHLDKSNKG KTAKLRSDTS ETTWNVKLDG  60
RRFSDGWEYF AVAHDLRVGD IVVFRHEGEL AFHVTALGPS CCEIQYGEDS QEEDKSEELC  120
DAMEEISRKK KRPKTEIDFS KDQSCFVITV TPSNLRRDTV YLPKAFAVVN CLMKKFEIVL  180
VNEERESWKL NLRQDSYLGR FYMSNGWRSF CVANGKKPGD MFTFKMLQNE TTPVLKLLPW  240
NNEDLHNPEK VPKKKHQEIE ADSSFVAIVT ASNIRRDTMY LPKTFAASNG LKSKFKIDLM  300
NEKGESWTID LRHEPYSGRF LIRSGWRSFC AANGKKPGDM FNFKLIRNVE TPVLKLFPLN  360
LPKLEPSEDT RQGLEATERE FLGVETNRDD SRQEAIRKGK WLEANETTIK EENISTSENR  420
FVTLTLTTSK LNLPLEFTKG NGIKNTEKIK MIDRYGTTWS TSLLMNKKKR GEMKLGKGCK  480
GFCEVNGVRM GDSFVLELVW EDTVPVLKFC YKC*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.5390.0seed
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00057298001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013664047.10.0B3 domain-containing protein REM10
SwissprotP0DH850.0REM10_ARATH; B3 domain-containing protein REM10
TrEMBLA0A078HD710.0A0A078HD71_BRANA; BnaA09g41250D protein
STRINGBo8g099610.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM144901522
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24700.10.0B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]