PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00057237001 | ||||||||
Common Name | GSBRNA2T00057237001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | NAC | ||||||||
Protein Properties | Length: 295aa MW: 33424.2 Da PI: 8.6753 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 91.1 | 1.9e-28 | 23 | 100 | 50 | 128 |
NAM 50 kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +v ++e+ew+fF+ r kky++g++++ratk gyWkatgk+++v+s ++e++g+k+tLvf+ grapkg +t+W+mhey + GSBRNA2T00057237001 23 SVVKSESEWFFFCARGKKYPHGSQNRRATKMGYWKATGKERNVKS-GSEVIGTKRTLVFHIGRAPKGGRTEWIMHEYCM 100 3445688**************************************.9******************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 32.038 | 1 | 116 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 2.88E-30 | 25 | 115 | IPR003441 | NAC domain |
Pfam | PF02365 | 8.7E-14 | 28 | 99 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 295 aa Download sequence Send to blast |
MKKGSCKSLK LTNMMEKWRQ YKSVVKSESE WFFFCARGKK YPHGSQNRRA TKMGYWKATG 60 KERNVKSGSE VIGTKRTLVF HIGRAPKGGR TEWIMHEYCM IGISLDALVV CRLRRNTEFQ 120 GATTQKPPSL SLDKNKNMQS EPVSESNSGW ENNMFDYYLS GESGHELLSE ITESSQSSHN 180 PQVPSEEDFY ADILRDDIVK LDDPADSGNT LIDVPRLQSE STTTRVLPLP SMVDKQMQSL 240 LQKLPLQNDI GEENNISMSS CFIGIYSIKS INRARWDVVA WVLVMIAVLV FYLV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-23 | 15 | 115 | 57 | 164 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-23 | 15 | 115 | 57 | 164 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-23 | 15 | 115 | 57 | 164 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-23 | 15 | 115 | 57 | 164 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-23 | 15 | 115 | 60 | 167 | NAC domain-containing protein 19 |
3swm_B | 1e-23 | 15 | 115 | 60 | 167 | NAC domain-containing protein 19 |
3swm_C | 1e-23 | 15 | 115 | 60 | 167 | NAC domain-containing protein 19 |
3swm_D | 1e-23 | 15 | 115 | 60 | 167 | NAC domain-containing protein 19 |
3swp_A | 1e-23 | 15 | 115 | 60 | 167 | NAC domain-containing protein 19 |
3swp_B | 1e-23 | 15 | 115 | 60 | 167 | NAC domain-containing protein 19 |
3swp_C | 1e-23 | 15 | 115 | 60 | 167 | NAC domain-containing protein 19 |
3swp_D | 1e-23 | 15 | 115 | 60 | 167 | NAC domain-containing protein 19 |
4dul_A | 1e-23 | 15 | 115 | 57 | 164 | NAC domain-containing protein 19 |
4dul_B | 1e-23 | 15 | 115 | 57 | 164 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, rosette leaves, cauline leaves, shoot apex, stems and flowers. {ECO:0000269|PubMed:17158162}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) (By similarity). Transcription factor involved in modulation of abscisic acid (ABA) signaling. Attenuates ABA sensitivity and glucose-induced ABA accumulation. Reduces the expression of ABI4 gene. {ECO:0000250|UniProtKB:Q949N0, ECO:0000269|PubMed:24625790}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00057237001 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By glucose (PubMed:24625790). Induced by salt, drought stress and methyl methanesulfonate (MMS) treatment (PubMed:17158162). {ECO:0000269|PubMed:17158162, ECO:0000269|PubMed:24625790}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF974763 | 0.0 | KF974763.1 Brassica napus NAC transcription factor 60-1 (NAC60-1.1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009117877.1 | 0.0 | PREDICTED: NAC domain-containing protein 60 | ||||
Swissprot | Q9LXL9 | 1e-177 | NAC60_ARATH; NAC domain-containing protein 60 | ||||
TrEMBL | A0A078HAJ5 | 0.0 | A0A078HAJ5_BRANA; BnaA01g33090D protein | ||||
STRING | Bra021471.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4309 | 23 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G44290.1 | 1e-179 | NAC domain containing protein 60 |
Publications ? help Back to Top | |||
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