PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00056732001

Common Name

GSBRNA2T00056732001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

MYB_related

Protein Properties

Length: 508aa MW: 56579.4 Da PI: 10.0592

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00056732001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	21.7	4.9e-07	439	487	2	47
SSS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwqky 47 ++WT+ E++++ +vk+++ Wk ++ ++ +R++k+++ +++++ GSBRNA2T00056732001 439 KSWTAKEEQKFESLVKKYPLSrcdgFWKYASKAFP-RRSEKDLIGYYYNV 487 58***************99**********.*********996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00433	1.0E-5	1	333	IPR001241	DNA topoisomerase, type IIA
Gene3D	G3DSA:3.30.230.10	9.8E-48	36	204	IPR014721	Ribosomal protein S5 domain 2-type fold, subgroup
CDD	cd00822	6.78E-54	36	205	No hit	No description
PRINTS	PR01159	2.7E-10	36	58	IPR000565	DNA topoisomerase, type IIA, subunit B
Pfam	PF00204	2.5E-44	38	204	IPR013506	DNA topoisomerase, type IIA, subunit B, domain 2
SuperFamily	SSF54211	1.29E-37	41	204	IPR020568	Ribosomal protein S5 domain 2-type fold
PRINTS	PR01159	2.7E-10	126	142	IPR000565	DNA topoisomerase, type IIA, subunit B
PRINTS	PR01159	2.7E-10	174	188	IPR000565	DNA topoisomerase, type IIA, subunit B
PRINTS	PR01159	2.7E-10	188	208	IPR000565	DNA topoisomerase, type IIA, subunit B
SMART	SM00717	0.0026	437	490	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.4E-4	437	488	IPR009057	Homeodomain-like
SuperFamily	SSF46689	7.8E-7	438	495	IPR009057	Homeodomain-like
CDD	cd00167	1.03E-5	440	488	No hit	No description
PROSITE profile	PS50090	6.133	440	488	IPR017877	Myb-like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006265	Biological Process	DNA topological change
GO:0003677	Molecular Function	DNA binding
GO:0003918	Molecular Function	DNA topoisomerase type II (ATP-hydrolyzing) activity
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 508 aa Download sequence Send to blast
MSCGTVRKVT RKDVKVVKAS MEKEDNLYKD CVKGGGGASV YITWLIGDKR PLHDVMGFKK 60 EVNDIKIDIA LQWYIDVYSD TVLGYANGIH TVDGGTHIDG AKASITRTIN TLGKKKKYVK 120 DLDLSGEHIR EGLTCIVAVA VTKPEFVGQT KKKLGNPKIR EIVDTSVQEY LTEYFELHPD 180 VFESIYTKSF KAYQKALALK RARKVISTPR TVPQNQTKRS SGKFEIFIPI GESSVGAAKH 240 GDNDRRFQSK RTLEQPLSNG AAVSTAPPGR SLENTIDSRV DKKRQKVVPS SQHPSSSSRQ 300 TVAAASRRPN RKDVGAKTLK GVSTGSSKTK PVIPVGPGFQ AEIPIWIAPT KKGKFYGSPG 360 DSDTLRWIGT AVWPTYSLKK KDHHKKVGEG RPDSCSCANP GSVDCAKLHI KEARELLEKE 420 TDGAFYTWKF DEMGEVGSKS WTAKEEQKFE SLVKKYPLSR CDGFWKYASK AFPRRSEKDL 480 IGYYYNVFLN HRNTDDDHYG DFLADHR*

Sequence ? help Back to Top

Protein Sequence Length: 508 aa Download sequence Send to blast

MSCGTVRKVT RKDVKVVKAS MEKEDNLYKD CVKGGGGASV YITWLIGDKR PLHDVMGFKK  60
EVNDIKIDIA LQWYIDVYSD TVLGYANGIH TVDGGTHIDG AKASITRTIN TLGKKKKYVK  120
DLDLSGEHIR EGLTCIVAVA VTKPEFVGQT KKKLGNPKIR EIVDTSVQEY LTEYFELHPD  180
VFESIYTKSF KAYQKALALK RARKVISTPR TVPQNQTKRS SGKFEIFIPI GESSVGAAKH  240
GDNDRRFQSK RTLEQPLSNG AAVSTAPPGR SLENTIDSRV DKKRQKVVPS SQHPSSSSRQ  300
TVAAASRRPN RKDVGAKTLK GVSTGSSKTK PVIPVGPGFQ AEIPIWIAPT KKGKFYGSPG  360
DSDTLRWIGT AVWPTYSLKK KDHHKKVGEG RPDSCSCANP GSVDCAKLHI KEARELLEKE  420
TDGAFYTWKF DEMGEVGSKS WTAKEEQKFE SLVKKYPLSR CDGFWKYASK AFPRRSEKDL  480
IGYYYNVFLN HRNTDDDHYG DFLADHR*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6gau_A	4e-26	36	275	256	501	DNA gyrase subunit B,DNA gyrase subunit A
6gau_B	4e-26	36	275	256	501	DNA gyrase subunit B,DNA gyrase subunit A
6gav_A	4e-26	36	275	256	501	DNA gyrase subunit B,DNA gyrase subunit A
6gav_B	4e-26	36	275	256	501	DNA gyrase subunit B,DNA gyrase subunit A
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Functional Description ? help Back to Top
Source	Description
UniProt	A type II topoisomerase that negatively supercoils closed circular double-stranded DNA in an ATP-dependent manner. {ECO:0000269\|PubMed:15136745}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00056732001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013724663.1	0.0	uncharacterized protein LOC106428453 isoform X1
Refseq	XP_013724671.1	0.0	uncharacterized protein LOC106428453 isoform X1
Refseq	XP_022566151.1	0.0	uncharacterized protein LOC106428453 isoform X1
Swissprot	Q9SS38	4e-70	GYRBP_ARATH; DNA gyrase subunit B, chloroplastic
TrEMBL	A0A078JKB2	0.0	A0A078JKB2_BRANA; DNA topoisomerase 2
STRING	Bra005794.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM11639	4	5

Publications ? help Back to Top
Wall MK,Mitchenall LA,Maxwell A Arabidopsis thaliana DNA gyrase is targeted to chloroplasts and mitochondria. Proc. Natl. Acad. Sci. U.S.A., 2004. 101(20): p. 7821-6 [PMID:15136745] Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]