PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00056449001

Common Name

GSBRNA2T00056449001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

MYB_related

Protein Properties

Length: 301aa MW: 34065.7 Da PI: 5.2473

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00056449001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	27.8	5.9e-09	19	42	23	47
-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqky 47 +W+ Ia++++ gRt++++k++w+++ GSBRNA2T00056449001 19 RWAHIASHLP-GRTDNEIKNYWNSW 42 4*******.**********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	9.481	1	47	IPR017930	Myb domain
SuperFamily	SSF46689	3.12E-8	13	52	IPR009057	Homeodomain-like
CDD	cd00167	1.79E-7	14	43	No hit	No description
Pfam	PF00249	5.0E-7	19	42	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	5.5E-11	19	43	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 301 aa Download sequence Send to blast
MYVLNCLMFL SLLLYMFFRW AHIASHLPGR TDNEIKNYWN SWIKKKIRKP HHHYNRHQPS 60 KTTVTLNVEA TSTVTALPST TTTSTIDNLH FDGFMDSPNQ LNFPYDQETN AKIQEALFSH 120 KPHLFMLDTT LPVLEGMFSQ NIITNNNNNN NDYDTQTGGR GSVFEQSFLT HNTEQGDMNL 180 PQQERFQLPT MVSNLFSNST NSNTETVTSY KLPALVGGNL NNISQVDNNN AQDGDIASTF 240 ECLRKQELNY DEWINSQQCS NFFFWDNLNI NVEGSSLVGN QDPSMTLGSS ALSSSFPSSF 300 *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00056449001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189264	0.0	AC189264.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB022A09, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009112912.1	0.0	PREDICTED: transcription factor MYB46
TrEMBL	A0A078H9E8	0.0	A0A078H9E8_BRANA; BnaA09g11280D protein
STRING	Bra027668.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8760	25	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G63910.1	1e-118	myb domain protein 103

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]