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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00056228001 | ||||||||
Common Name | GSBRNA2T00056228001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | HSF | ||||||||
Protein Properties | Length: 380aa MW: 43921.9 Da PI: 4.9615 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 111.3 | 6.6e-35 | 58 | 150 | 2 | 103 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 Fl+k+y+++ed+++++++sws+ +nsf+v+d+e+f+ ++Lp +Fkh+nf+SFvRQLn+YgF+kv+ ++ weF+++ F +g+k GSBRNA2T00056228001 58 FLTKTYDLVEDSRTNHVVSWSQANNSFIVWDPESFSMTLLPIFFKHNNFSSFVRQLNTYGFRKVNPDR---------WEFANEGFLRGQK 138 9****************************************************************999.........************* PP XXXXXXXXXXXX CS HSF_DNA-bind 92 ellekikrkkse 103 +ll++i+r+k++ GSBRNA2T00056228001 139 HLLKTIRRRKTS 150 *********987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46785 | 1.36E-34 | 53 | 147 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 1.5E-37 | 54 | 147 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 5.6E-58 | 54 | 147 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.9E-18 | 58 | 81 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 2.6E-30 | 58 | 147 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.9E-18 | 96 | 108 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 97 | 121 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.9E-18 | 109 | 121 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 380 aa Download sequence Send to blast |
MDPSYRFIKE EFPRGFNDSP SPPSSYLYTT SMAPNDPTTT LSSPQPIEGL HESGPPPFLT 60 KTYDLVEDSR TNHVVSWSQA NNSFIVWDPE SFSMTLLPIF FKHNNFSSFV RQLNTYGFRK 120 VNPDRWEFAN EGFLRGQKHL LKTIRRRKTS NNNQMQPPQS SSQLQSLDNC CIEVGKYGLD 180 GEMDSLRRDK QVLMMELVKV RQQQQSTKMD LTLLEDKLKK TESKQKQMMS FLARAMQNPD 240 FLQQLIEQKE KRKNTEEAID KKRQRPIDQG KRHDAGSSSA FFDMKQETYG DMSELDRLAM 300 HIQGLGDQCN KEDVVLDVGK GNEEEQHKER YQDENNEIYG EGFWEDLLNE GQNFDLQGDD 360 EENVDVLIEQ LGYLGSSRH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ldu_A | 1e-23 | 53 | 150 | 12 | 123 | Heat shock factor protein 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00371 | DAP | Transfer from AT3G22830 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00056228001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY045974 | 0.0 | AY045974.1 Arabidopsis thaliana putative heat shock protein (At3g22830) mRNA, complete cds. | |||
GenBank | AY079374 | 0.0 | AY079374.1 Arabidopsis thaliana putative heat shock protein (At3g22830) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013732918.1 | 0.0 | heat stress transcription factor A-6b-like | ||||
Swissprot | Q9LUH8 | 0.0 | HFA6B_ARATH; Heat stress transcription factor A-6b | ||||
TrEMBL | A0A078H9Q1 | 0.0 | A0A078H9Q1_BRANA; BnaA01g24460D protein | ||||
STRING | Bra023800.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1256 | 28 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G22830.1 | 0.0 | heat shock transcription factor A6B |
Publications ? help Back to Top | |||
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