PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00055896001
Common NameGSBRNA2T00055896001, LOC106385549
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family SBP
Protein Properties Length: 349aa    MW: 38195.2 Da    PI: 7.0716
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00055896001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP130.65.4e-41104180278
                          -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                  SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                          C v+gC++d+s+ +eyh+rhkvC+vhsk+pvv++sg++qrfCqqCsrfh+l+efD++krsCr+rL++hn+rrrk+q+
  GSBRNA2T00055896001 104 CLVDGCDSDFSNSREYHKRHKVCDVHSKTPVVTISGQKQRFCQQCSRFHALEEFDDGKRSCRKRLDGHNRRRRKPQT 180
                          9*************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.4E-3297165IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.641101178IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.88E-39102183IPR004333Transcription factor, SBP-box
PfamPF031103.4E-31104177IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MDWNFKLSSG SLPHFDQESV PDLTPIDGSS SSPRLEPKGE FSFDLKLGRN IGNSSSAFGN  60
TEQVTCLSKW KETTAFPKPE ASRNSGSSKR TRGNATENNQ IPFCLVDGCD SDFSNSREYH  120
KRHKVCDVHS KTPVVTISGQ KQRFCQQCSR FHALEEFDDG KRSCRKRLDG HNRRRRKPQT  180
DHIAPPAHFF QGSKLVEFPG ASHVFPTTSV ATSSWGNGLV SEAMANGSSY GQNQSYAGSS  240
PAKTGIMFPD SSSLNSTGKQ FPFLQEEESS RTASLCERMT SCTHDSDFAL SLLSSSSSSI  300
PLSLSQEAVD TVFYRPALFE NVSAVSDGSV TSGNEVVALP QMFPFHWE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A2e-28101177884squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1160177KRSCRKRLDGHNRRRRKP
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Weak increase of expression during floral induction. {ECO:0000269|PubMed:14573523}.
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00055896001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by microRNAs miR156 and miR157. {ECO:0000305|PubMed:12202040}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013680917.10.0squamosa promoter-binding-like protein 13A
SwissprotB9DI201e-173SP13A_ARATH; Squamosa promoter-binding-like protein 13A
SwissprotP0DI111e-173SP13B_ARATH; Squamosa promoter-binding-like protein 13B
TrEMBLA0A078HB600.0A0A078HB60_BRANA; BnaC03g27870D protein
STRINGBo3g042890.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM41112759
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50670.11e-170SBP family protein
Publications ? help Back to Top
  1. Jorgensen SA,Preston JC
    Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis.
    Mol. Phylogenet. Evol., 2014. 73: p. 129-39
    [PMID:24508602]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  3. Xu M, et al.
    Developmental Functions of miR156-Regulated SQUAMOSA PROMOTER BINDING PROTEIN-LIKE (SPL) Genes in Arabidopsis thaliana.
    PLoS Genet., 2016. 12(8): p. e1006263
    [PMID:27541584]