PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00055804001
Common NameGSBRNA2T00055804001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 303aa    MW: 35019.9 Da    PI: 9.8087
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00055804001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.46.8e-1095164153
                          CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC....................TTS-STCHHHHHHHHHHHHH CS
                  HLH   1 rrrahnerErrRRdriNsafeeLrellPkas.................kapskKlsKaeiLekAveYIks 53 
                          +r++h ++Er+RR+++N+ ++ L+ ++P ++                  +   K + a+i e +++Y+k+
  GSBRNA2T00055804001  95 QRMNHIAVERNRRRQMNHFLSILKAMMPLSYsqrvrhqqrlsnfdifcYTFYYKSDQASIIEGTINYLKK 164
                          79***************************555****************9999999************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.22E-1092170No hitNo description
Gene3DG3DSA:4.10.280.103.1E-1092168IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.14E-1293183IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.68794165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-795164IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.0012100171IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF550218.13E-5227292No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MMFQHEYPYG FSLMETSSSY EVLDYKMIVG SPPNPISFAS SLATLSSSIA EQQSNSTDNL  60
YSLQARGGFG EEPPRKKRRR RRTRSEQMIE EKENQRMNHI AVERNRRRQM NHFLSILKAM  120
MPLSYSQRVR HQQRLSNFDI FCYTFYYKSD QASIIEGTIN YLKKQEQLLQ SFEAQLKPTK  180
PNQPTNIFSD FFNFPQYSTA IASSRRRHHN GLAVVADVEV TMVEMHANIK VLTKTRPRLL  240
LKMINEFDSL GLTIFHLNLT TSNNMSLFTF SVKVDEACRL TTTANEVADA VHEVVSRIHK  300
EH*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17480RKKRRRR
27581KKRRRRR
37681KRRRRR
47782RRRRRT
595106RMNHIAVERNRR
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00055804001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by heat treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013675453.10.0transcription factor bHLH99-like
SwissprotQ9FKQ61e-103BH099_ARATH; Transcription factor bHLH99
TrEMBLA0A078H8070.0A0A078H807_BRANA; BnaC02g43710D protein
STRINGBo00615s100.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM149591619
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65320.11e-103bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]