PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00055779001

Common Name

GSBRNA2T00055779001, LOC106380208, LOC106380209

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Dof

Protein Properties

Length: 303aa MW: 33936.6 Da PI: 8.6587

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00055779001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	123.7	6.2e-39	33	92	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +++lkcprC+s+ntkfCyynnyslsqPr+fCk+CrryWt+GG+lrnvP+Ggg+rk kks GSBRNA2T00055779001 33 DQQTLKCPRCNSSNTKFCYYNNYSLSQPRHFCKSCRRYWTRGGSLRNVPIGGGCRKTKKS 92 57899****************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	9.0E-34	20	91	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	4.6E-33	35	91	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.478	37	91	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	39	75	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 303 aa Download sequence Send to blast
MSSHTNLHSP KPDHRITGAS HTKKPPSSTA SQDQQTLKCP RCNSSNTKFC YYNNYSLSQP 60 RHFCKSCRRY WTRGGSLRNV PIGGGCRKTK KSIKPSIVAP SSSSQRFFSS TMEEASKFFT 120 PPTAMDFQLA GLSLSKINDL QLMNNQEVLG LRTTMEQVET TPVDVGSGLT LMGFGDYNSN 180 NNHSPVTFTT DGNLATSIET LSCLNQDLHW RLQQQRMAMF FGNSKEETVV VERPQPLLYR 240 NLEIVNSSPS LTSKKGENQT EWYFGNNNDN ERVINNNENN NTGGSDQWNN GIQAWTDLNH 300 YN*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00055779001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013675466.1	0.0	dof zinc finger protein DOF5.7-like
Refseq	XP_013675468.1	0.0	dof zinc finger protein DOF5.7-like
Swissprot	Q9LSL6	1e-166	DOF57_ARATH; Dof zinc finger protein DOF5.7
TrEMBL	A0A078HAS9	0.0	A0A078HAS9_BRANA; BnaC02g43890D protein
STRING	Bo2g168270.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4950	28	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65590.1	1e-159	Dof family protein

Link Out ? help Back to Top
Entrez Gene	106380208 \| 106380209

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293] Castorina G,Fox S,Tonelli C,Galbiati M,Conti L A novel role for STOMATAL CARPENTER 1 in stomata patterning. BMC Plant Biol., 2016. 16(1): p. 172 [PMID:27484174]