PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00055136001 | ||||||||
Common Name | GSBRNA2T00055136001, LOC106363106, LOC106365455, LOC106373884, LOC106413589 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | WOX | ||||||||
Protein Properties | Length: 276aa MW: 31962 Da PI: 6.7447 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 64.7 | 1.3e-20 | 44 | 102 | 3 | 56 |
--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakek 56 +R+++t+eq+ +Le+++ + +r+p++++++++A+kl +++ ++V++WFqN++ +ek GSBRNA2T00055136001 44 SRWNPTPEQTMVLEKVYSSgTRTPTTQQIQDIASKLqkygRIEGKNVFYWFQNHKSREK 102 7*****************99*************************************99 PP | |||||||
2 | Wus_type_Homeobox | 108.6 | 3.7e-35 | 43 | 104 | 3 | 64 |
Wus_type_Homeobox 3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 ++RW+PtpeQ ++Le++y+sG+rtP++++iq+i+++L++yG+ie+kNVfyWFQN+k+Re+ k GSBRNA2T00055136001 43 HSRWNPTPEQTMVLEKVYSSGTRTPTTQQIQDIASKLQKYGRIEGKNVFYWFQNHKSREKLK 104 68*********************************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 11.094 | 39 | 104 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.97E-12 | 40 | 103 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 8.5E-5 | 41 | 108 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 7.0E-9 | 44 | 102 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 4.0E-18 | 44 | 102 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.44E-5 | 45 | 102 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 276 aa Download sequence Send to blast |
MGYNKDLTSH TLAHHCNIND IRNDEQIIAG SEGKPKEREK YMHSRWNPTP EQTMVLEKVY 60 SSGTRTPTTQ QIQDIASKLQ KYGRIEGKNV FYWFQNHKSR EKLKRRRGDQ QGVTAINNVH 120 EESLNKDNAT ANKASSSVSR RRGDHRVIHT RTSLSSSPTH PQKNNVDDGK REHYETGVKD 180 EEATGQNQKN PIYTSEFKYH LKVASKPSQE ADQQYTLNDD DDDEEEEEET RKSRTLDLFP 240 VTENQETTGF AETNTKPNQL YCNYCYYYEF MPLMN* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00055136001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013601823.1 | 1e-151 | PREDICTED: WUSCHEL-related homeobox 6-like | ||||
TrEMBL | A0A078HA42 | 0.0 | A0A078HA42_BRANA; BnaA09g45340D protein | ||||
TrEMBL | A0A3P5YRY5 | 0.0 | A0A3P5YRY5_BRACM; Uncharacterized protein | ||||
STRING | Bo8g106350.1 | 1e-164 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM13369 | 18 | 28 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G01500.1 | 4e-42 | WOX family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 106363106 | 106365455 | 106373884 | 106413589 |
Publications ? help Back to Top | |||
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