PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00054294001
Common NameGSBRNA2T00054294001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GRF
Protein Properties Length: 401aa    MW: 45820 Da    PI: 8.9699
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00054294001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC72.45e-23223264142
                  WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrks 42 
                          daepgrCrRtDGKkWRCs+++ +++k+CErH+hrg++rs+++
  GSBRNA2T00054294001 223 DAEPGRCRRTDGKKWRCSKDASPDSKYCERHMHRGKNRSSRK 264
                          79*************************************985 PP
2QLQ552.5e-19154189237
                  QLQ   2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                          +FT +Q+++L++Q+l++Ky+aan PvPp+Ll+ i++
  GSBRNA2T00054294001 154 HFTESQWEELENQALVFKYIAANIPVPPHLLFLIRR 189
                          7*******************************9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009511.3E-12153189IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166621.52154189IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088804.9E-14154188IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166724.305223267IPR014977WRC domain
PfamPF088796.1E-19224264IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    Send to blast
MGNQRNIWWL RVSNIAHADV KKIICDEAIQ VEVPIIRCGP TTRNGAKVIR EGFFKAVQEI  60
LDQDKETGQN QLLIEEMVQL NIQDQAGPIE VQDQADPIQF RSLSQNRTGL IISQAIPVQT  120
QLQSSPVLLS DPSVRNKTSF IISFLYLFMT TRIHFTESQW EELENQALVF KYIAANIPVP  180
PHLLFLIRRP FLFSSSAYSS SPNFFSPHFG WNVYEMGKER KIDAEPGRCR RTDGKKWRCS  240
KDASPDSKYC ERHMHRGKNR SSRKPLPPPP QFYVPSTPSI FLDFSLSSSR EKSKRTGYMN  300
DFFSIEPSGS IKSCSGLAME GDGGSSKYES LKQREKQTDR SCFIVGTELG TLERPLMLVA  360
KQKQRDDKDY EEEEQRSKRF YKFLDEWPSS KSSGSTSLFI *
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed during the early stages of leaf development and expression decreases with the maturation of the leaf. {ECO:0000269|PubMed:20023165}.
UniprotTISSUE SPECIFICITY: Strongly expressed in actively growing and developing tissues, such as roots, upper stems, and shoot tips containing the shoot apical meristem (SAM) and flower buds. Also expressed in mature flowers, but weakly expressed in mature stems and leaves. {ECO:0000269|PubMed:12974814}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00263DAPTransfer from AT2G06200Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00054294001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0605868e-69AY060586.1 Arabidopsis thaliana At2g06200/F5K7.4 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013651440.10.0growth-regulating factor 6
SwissprotQ9ZQ121e-105GRF6_ARATH; Growth-regulating factor 6
TrEMBLA0A078H7L40.0A0A078H7L4_BRANA; BnaA07g04320D protein
STRINGBra015184.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM141011821
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G06200.11e-102growth-regulating factor 6
Publications ? help Back to Top
  1. Vercruyssen L, et al.
    ANGUSTIFOLIA3 binds to SWI/SNF chromatin remodeling complexes to regulate transcription during Arabidopsis leaf development.
    Plant Cell, 2014. 26(1): p. 210-29
    [PMID:24443518]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  3. Cao Y,Han Y,Jin Q,Lin Y,Cai Y
    Comparative Genomic Analysis of the GRF Genes in Chinese Pear (Pyrus bretschneideri Rehd), Poplar (Populous), Grape (Vitis vinifera), Arabidopsis and Rice (Oryza sativa).
    Front Plant Sci, 2016. 7: p. 1750
    [PMID:27933074]