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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00054200001 | ||||||||
Common Name | GSBRNA2T00054200001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | AP2 | ||||||||
Protein Properties | Length: 193aa MW: 22366.2 Da PI: 10.5791 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 46 | 1.3e-14 | 49 | 106 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 y+GV++++++gr++A+++d s+n k+ ++++lg f ++ Aa+a++ a++k++g GSBRNA2T00054200001 49 YRGVTRHRWTGRYEAHLWDkNSWNEtqsKKgRQVYLGEFVLEDAAARAYDLAALKYWG 106 9******************888877877557**********99*************98 PP | |||||||
2 | AP2 | 29.8 | 1.5e-09 | 149 | 183 | 1 | 38 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgt 38 s+y+GV ++ +grW+A+I + g +k+ +lg++g GSBRNA2T00054200001 149 SKYRGVAKHHHNGRWEARIGRvF---G-NKYLYLGTYGN 183 89****************99966...3.6*********7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 8.5E-16 | 47 | 115 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 2.0E-15 | 48 | 114 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.1E-23 | 48 | 120 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.783 | 48 | 114 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-5 | 49 | 60 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.1E-11 | 49 | 106 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-5 | 96 | 116 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.8E-5 | 149 | 182 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.42E-5 | 149 | 183 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 8.57 | 150 | 192 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 6.3E-4 | 150 | 181 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 0.075 | 150 | 188 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 193 aa Download sequence Send to blast |
MKEISRRSKK TSVENKTGDE TSASSVVPKT KRKRRSQPRD APPQRSSMYR GVTRHRWTGR 60 YEAHLWDKNS WNETQSKKGR QVYLGEFVLE DAAARAYDLA ALKYWGRDTV LNFPLCNYEE 120 DIKDMESQSK EEYIGSLRRK SSGFSRGVSK YRGVAKHHHN GRWEARIGRV FGNKYLYLGT 180 YGNLYKPSFI LT* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00054200001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY045915 | 1e-170 | AY045915.1 Arabidopsis thaliana unknown protein (At1g16060) mRNA, complete cds. | |||
GenBank | AY133880 | 1e-170 | AY133880.1 Arabidopsis thaliana clone U10081 unknown protein (At1g16060) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013638688.1 | 1e-117 | PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060 | ||||
Refseq | XP_013688699.1 | 1e-117 | AP2-like ethylene-responsive transcription factor At1g16060 | ||||
Swissprot | Q94AN4 | 1e-108 | AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060 | ||||
TrEMBL | A0A078H659 | 1e-140 | A0A078H659_BRANA; BnaC05g12270D protein | ||||
STRING | Bo5g021520.1 | 1e-112 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM553 | 27 | 140 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G16060.1 | 1e-110 | ARIA-interacting double AP2 domain protein |
Publications ? help Back to Top | |||
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